Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13735

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13725 and CA264_13730 are separated by 154 nucleotidesCA264_13730 and CA264_13735 are separated by 78 nucleotidesCA264_13735 and CA264_13740 are separated by 11 nucleotidesCA264_13740 and CA264_13745 are separated by 266 nucleotides CA264_13725: CA264_13725 - alpha/beta hydrolase, at 3,207,714 to 3,208,517 _13725 CA264_13730: CA264_13730 - hypothetical protein, at 3,208,672 to 3,209,214 _13730 CA264_13735: CA264_13735 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,209,293 to 3,210,186 _13735 CA264_13740: CA264_13740 - cytidylate kinase, at 3,210,198 to 3,210,902 _13740 CA264_13745: CA264_13745 - adenine deaminase, at 3,211,169 to 3,212,803 _13745 Position (kb) 3209 3210 3211Strain fitness (log2 ratio) -2 -1 0 1 2at 3208.369 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.370 kb on - strand, within CA264_13725at 3208.378 kb on + strand, within CA264_13725at 3208.411 kb on + strand, within CA264_13725at 3208.412 kb on - strand, within CA264_13725at 3208.412 kb on - strand, within CA264_13725at 3208.480 kb on + strandat 3208.530 kb on + strandat 3208.530 kb on + strandat 3208.532 kb on + strandat 3208.532 kb on + strandat 3208.533 kb on - strandat 3208.533 kb on - strandat 3208.563 kb on + strandat 3208.564 kb on - strandat 3208.564 kb on - strandat 3208.567 kb on + strandat 3208.568 kb on - strandat 3208.573 kb on + strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.596 kb on + strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.623 kb on + strandat 3208.736 kb on + strand, within CA264_13730at 3208.736 kb on + strand, within CA264_13730at 3208.784 kb on + strand, within CA264_13730at 3208.800 kb on - strand, within CA264_13730at 3208.802 kb on - strand, within CA264_13730at 3208.812 kb on + strand, within CA264_13730at 3208.812 kb on + strand, within CA264_13730at 3208.821 kb on + strand, within CA264_13730at 3208.950 kb on + strand, within CA264_13730at 3208.951 kb on - strand, within CA264_13730at 3208.966 kb on - strand, within CA264_13730at 3209.130 kb on + strand, within CA264_13730at 3209.131 kb on - strand, within CA264_13730at 3209.151 kb on + strand, within CA264_13730at 3209.217 kb on + strandat 3209.217 kb on + strandat 3209.261 kb on + strandat 3209.262 kb on - strandat 3209.275 kb on - strandat 3209.321 kb on - strandat 3209.322 kb on + strandat 3209.323 kb on - strandat 3209.323 kb on - strandat 3209.323 kb on - strandat 3210.178 kb on + strandat 3210.925 kb on + strandat 3210.925 kb on + strandat 3210.982 kb on - strandat 3211.074 kb on - strandat 3211.106 kb on + strandat 3211.114 kb on - strandat 3211.150 kb on - strandat 3211.169 kb on - strandat 3211.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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3,208,369 + CA264_13725 0.81 -1.2
3,208,369 + CA264_13725 0.81 -0.3
3,208,369 + CA264_13725 0.81 +0.6
3,208,370 - CA264_13725 0.82 +0.0
3,208,378 + CA264_13725 0.83 -0.2
3,208,411 + CA264_13725 0.87 +2.1
3,208,412 - CA264_13725 0.87 +0.3
3,208,412 - CA264_13725 0.87 -0.9
3,208,480 + +0.2
3,208,530 + -0.5
3,208,530 + -0.9
3,208,532 + +0.2
3,208,532 + -0.5
3,208,533 - +1.2
3,208,533 - +0.1
3,208,563 + +0.1
3,208,564 - -0.0
3,208,564 - +0.2
3,208,567 + +0.3
3,208,568 - -1.1
3,208,573 + -0.8
3,208,577 - +1.1
3,208,577 - -0.3
3,208,577 - +1.3
3,208,577 - -0.1
3,208,596 + -0.5
3,208,597 - +1.5
3,208,597 - -0.3
3,208,597 - +0.5
3,208,597 - -0.1
3,208,623 + -0.2
3,208,736 + CA264_13730 0.12 -0.4
3,208,736 + CA264_13730 0.12 -0.3
3,208,784 + CA264_13730 0.21 -0.9
3,208,800 - CA264_13730 0.24 +0.5
3,208,802 - CA264_13730 0.24 -1.7
3,208,812 + CA264_13730 0.26 +0.2
3,208,812 + CA264_13730 0.26 -0.7
3,208,821 + CA264_13730 0.27 -0.3
3,208,950 + CA264_13730 0.51 -0.3
3,208,951 - CA264_13730 0.51 -0.2
3,208,966 - CA264_13730 0.54 -0.4
3,209,130 + CA264_13730 0.84 -0.0
3,209,131 - CA264_13730 0.85 -2.1
3,209,151 + CA264_13730 0.88 +0.2
3,209,217 + -0.4
3,209,217 + +0.1
3,209,261 + -1.8
3,209,262 - -0.0
3,209,275 - +1.2
3,209,321 - -0.2
3,209,322 + -0.5
3,209,323 - -0.2
3,209,323 - +0.1
3,209,323 - -0.1
3,210,178 + -0.4
3,210,925 + +1.0
3,210,925 + +0.4
3,210,982 - +0.1
3,211,074 - +0.7
3,211,106 + -0.3
3,211,114 - +1.1
3,211,150 - -0.0
3,211,169 - +0.4
3,211,169 - +0.0

Or see this region's nucleotide sequence