Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04160

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04150 and CA264_04155 are separated by 235 nucleotidesCA264_04155 and CA264_04160 are separated by 6 nucleotidesCA264_04160 and CA264_04165 are separated by 263 nucleotides CA264_04150: CA264_04150 - hypothetical protein, at 959,698 to 959,985 _04150 CA264_04155: CA264_04155 - hypothetical protein, at 960,221 to 960,670 _04155 CA264_04160: CA264_04160 - hypothetical protein, at 960,677 to 960,901 _04160 CA264_04165: CA264_04165 - isoaspartyl peptidase/L-asparaginase, at 961,165 to 962,079 _04165 Position (kb) 960 961Strain fitness (log2 ratio) -2 -1 0 1at 959.683 kb on + strandat 959.688 kb on - strandat 959.804 kb on + strand, within CA264_04150at 959.876 kb on + strand, within CA264_04150at 959.877 kb on - strand, within CA264_04150at 959.877 kb on - strand, within CA264_04150at 960.047 kb on + strandat 960.047 kb on + strandat 960.078 kb on - strandat 960.081 kb on - strandat 960.125 kb on + strandat 960.125 kb on + strandat 960.126 kb on - strandat 960.193 kb on + strandat 960.217 kb on - strandat 960.217 kb on - strandat 960.266 kb on + strand, within CA264_04155at 960.299 kb on + strand, within CA264_04155at 960.339 kb on + strand, within CA264_04155at 960.339 kb on + strand, within CA264_04155at 960.394 kb on + strand, within CA264_04155at 960.395 kb on - strand, within CA264_04155at 960.439 kb on + strand, within CA264_04155at 960.439 kb on + strand, within CA264_04155at 960.440 kb on - strand, within CA264_04155at 960.440 kb on - strand, within CA264_04155at 960.471 kb on - strand, within CA264_04155at 960.621 kb on - strand, within CA264_04155at 960.685 kb on - strandat 960.691 kb on - strandat 960.724 kb on + strand, within CA264_04160at 960.728 kb on + strand, within CA264_04160at 960.728 kb on + strand, within CA264_04160at 960.728 kb on + strand, within CA264_04160at 960.729 kb on - strand, within CA264_04160at 960.729 kb on - strand, within CA264_04160at 960.872 kb on + strand, within CA264_04160at 960.873 kb on - strand, within CA264_04160at 960.873 kb on - strand, within CA264_04160at 960.877 kb on - strand, within CA264_04160at 960.877 kb on - strand, within CA264_04160at 960.877 kb on - strand, within CA264_04160at 960.911 kb on - strandat 960.912 kb on + strandat 960.913 kb on - strandat 960.918 kb on + strandat 960.918 kb on + strandat 960.928 kb on + strandat 960.928 kb on + strandat 961.040 kb on - strandat 961.166 kb on + strandat 961.167 kb on - strandat 961.170 kb on + strandat 961.171 kb on - strandat 961.221 kb on - strandat 961.283 kb on - strand, within CA264_04165at 961.283 kb on - strand, within CA264_04165at 961.380 kb on - strand, within CA264_04165at 961.381 kb on + strand, within CA264_04165at 961.445 kb on + strand, within CA264_04165at 961.461 kb on - strand, within CA264_04165at 961.504 kb on + strand, within CA264_04165at 961.505 kb on - strand, within CA264_04165at 961.611 kb on - strand, within CA264_04165at 961.630 kb on - strand, within CA264_04165at 961.716 kb on + strand, within CA264_04165at 961.775 kb on + strand, within CA264_04165at 961.776 kb on - strand, within CA264_04165at 961.783 kb on - strand, within CA264_04165

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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959,683 + +0.8
959,688 - +0.0
959,804 + CA264_04150 0.37 +0.7
959,876 + CA264_04150 0.62 -0.7
959,877 - CA264_04150 0.62 +0.2
959,877 - CA264_04150 0.62 -0.1
960,047 + -0.3
960,047 + +0.1
960,078 - -0.4
960,081 - -0.4
960,125 + +0.6
960,125 + -0.2
960,126 - +0.8
960,193 + -0.2
960,217 - +1.1
960,217 - +0.3
960,266 + CA264_04155 0.10 +0.1
960,299 + CA264_04155 0.17 -0.4
960,339 + CA264_04155 0.26 +0.6
960,339 + CA264_04155 0.26 -2.2
960,394 + CA264_04155 0.38 -0.9
960,395 - CA264_04155 0.39 -1.5
960,439 + CA264_04155 0.48 -0.9
960,439 + CA264_04155 0.48 -0.9
960,440 - CA264_04155 0.49 +0.4
960,440 - CA264_04155 0.49 +1.4
960,471 - CA264_04155 0.56 +0.6
960,621 - CA264_04155 0.89 -0.5
960,685 - +0.3
960,691 - +0.1
960,724 + CA264_04160 0.21 +0.1
960,728 + CA264_04160 0.23 -1.0
960,728 + CA264_04160 0.23 +0.0
960,728 + CA264_04160 0.23 +0.1
960,729 - CA264_04160 0.23 -1.3
960,729 - CA264_04160 0.23 +0.2
960,872 + CA264_04160 0.87 +0.6
960,873 - CA264_04160 0.87 +0.4
960,873 - CA264_04160 0.87 -0.7
960,877 - CA264_04160 0.89 +0.1
960,877 - CA264_04160 0.89 +1.4
960,877 - CA264_04160 0.89 -0.5
960,911 - -0.1
960,912 + -0.3
960,913 - +0.1
960,918 + -0.2
960,918 + +0.6
960,928 + +0.1
960,928 + -0.1
961,040 - +0.6
961,166 + +0.6
961,167 - +0.9
961,170 + +0.9
961,171 - +0.7
961,221 - -0.4
961,283 - CA264_04165 0.13 +0.3
961,283 - CA264_04165 0.13 -1.3
961,380 - CA264_04165 0.23 -0.7
961,381 + CA264_04165 0.24 +0.7
961,445 + CA264_04165 0.31 -0.3
961,461 - CA264_04165 0.32 -1.2
961,504 + CA264_04165 0.37 +0.0
961,505 - CA264_04165 0.37 -0.5
961,611 - CA264_04165 0.49 +1.4
961,630 - CA264_04165 0.51 +0.0
961,716 + CA264_04165 0.60 -0.6
961,775 + CA264_04165 0.67 -0.2
961,776 - CA264_04165 0.67 +0.0
961,783 - CA264_04165 0.68 -0.1

Or see this region's nucleotide sequence