Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03665

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03660 and CA264_03665 are separated by 492 nucleotidesCA264_03665 and CA264_03670 are separated by 95 nucleotidesCA264_03670 and CA264_03675 are separated by 346 nucleotides CA264_03660: CA264_03660 - hypothetical protein, at 855,436 to 855,912 _03660 CA264_03665: CA264_03665 - FUSC family protein, at 856,405 to 857,457 _03665 CA264_03670: CA264_03670 - polyisoprenoid-binding protein, at 857,553 to 858,086 _03670 CA264_03675: CA264_03675 - hypothetical protein, at 858,433 to 859,383 _03675 Position (kb) 856 857 858Strain fitness (log2 ratio) -1 0 1 2at 855.427 kb on + strandat 855.504 kb on + strand, within CA264_03660at 855.743 kb on - strand, within CA264_03660at 855.824 kb on - strand, within CA264_03660at 855.863 kb on - strand, within CA264_03660at 855.863 kb on - strand, within CA264_03660at 855.869 kb on + strandat 855.870 kb on - strandat 855.917 kb on + strandat 855.918 kb on - strandat 855.953 kb on + strandat 855.954 kb on - strandat 855.958 kb on + strandat 855.978 kb on - strandat 855.982 kb on + strandat 855.996 kb on + strandat 856.190 kb on + strandat 856.192 kb on + strandat 856.196 kb on + strandat 856.196 kb on + strandat 856.197 kb on - strandat 856.225 kb on - strandat 856.309 kb on - strandat 856.311 kb on + strandat 856.330 kb on - strandat 856.411 kb on - strandat 856.428 kb on - strandat 856.477 kb on - strandat 856.501 kb on + strandat 856.561 kb on + strand, within CA264_03665at 856.561 kb on + strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.693 kb on + strand, within CA264_03665at 856.720 kb on + strand, within CA264_03665at 856.721 kb on - strand, within CA264_03665at 856.721 kb on - strand, within CA264_03665at 856.723 kb on + strand, within CA264_03665at 856.724 kb on - strand, within CA264_03665at 856.729 kb on - strand, within CA264_03665at 856.729 kb on - strand, within CA264_03665at 856.869 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.874 kb on - strand, within CA264_03665at 856.874 kb on - strand, within CA264_03665at 856.939 kb on + strand, within CA264_03665at 857.201 kb on + strand, within CA264_03665at 857.202 kb on - strand, within CA264_03665at 857.244 kb on + strand, within CA264_03665at 857.251 kb on - strand, within CA264_03665at 857.251 kb on - strand, within CA264_03665at 857.258 kb on + strand, within CA264_03665at 857.259 kb on - strand, within CA264_03665at 857.402 kb on - strandat 857.402 kb on - strandat 857.455 kb on + strandat 857.456 kb on - strandat 857.481 kb on - strandat 857.536 kb on + strandat 857.538 kb on + strandat 857.538 kb on + strandat 857.566 kb on - strandat 857.746 kb on - strand, within CA264_03670at 857.796 kb on - strand, within CA264_03670at 857.840 kb on + strand, within CA264_03670at 857.840 kb on + strand, within CA264_03670at 857.926 kb on - strand, within CA264_03670at 857.980 kb on - strand, within CA264_03670at 858.063 kb on + strandat 858.063 kb on + strandat 858.064 kb on - strandat 858.086 kb on + strandat 858.086 kb on + strandat 858.086 kb on + strandat 858.090 kb on - strandat 858.090 kb on - strandat 858.115 kb on - strandat 858.158 kb on - strandat 858.158 kb on - strandat 858.190 kb on - strandat 858.229 kb on - strandat 858.250 kb on + strandat 858.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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855,427 + -0.4
855,504 + CA264_03660 0.14 -0.5
855,743 - CA264_03660 0.64 +0.1
855,824 - CA264_03660 0.81 -0.3
855,863 - CA264_03660 0.90 -0.1
855,863 - CA264_03660 0.90 +2.0
855,869 + +0.2
855,870 - +1.5
855,917 + -0.2
855,918 - -0.2
855,953 + -0.6
855,954 - -0.3
855,958 + +0.6
855,978 - -0.3
855,982 + +0.0
855,996 + +0.0
856,190 + +0.3
856,192 + +0.2
856,196 + -0.1
856,196 + -1.4
856,197 - +0.2
856,225 - +0.6
856,309 - +0.3
856,311 + -0.6
856,330 - -0.1
856,411 - -0.6
856,428 - -0.1
856,477 - -0.1
856,501 + +1.6
856,561 + CA264_03665 0.15 +1.4
856,561 + CA264_03665 0.15 -0.0
856,562 - CA264_03665 0.15 -0.5
856,562 - CA264_03665 0.15 +0.5
856,562 - CA264_03665 0.15 +0.3
856,599 - CA264_03665 0.18 -0.3
856,599 - CA264_03665 0.18 -0.2
856,599 - CA264_03665 0.18 -0.0
856,693 + CA264_03665 0.27 -0.1
856,720 + CA264_03665 0.30 -0.9
856,721 - CA264_03665 0.30 -0.2
856,721 - CA264_03665 0.30 -0.8
856,723 + CA264_03665 0.30 +0.3
856,724 - CA264_03665 0.30 -0.7
856,729 - CA264_03665 0.31 -1.1
856,729 - CA264_03665 0.31 -0.2
856,869 + CA264_03665 0.44 -0.1
856,873 + CA264_03665 0.44 +0.8
856,873 + CA264_03665 0.44 +0.7
856,873 + CA264_03665 0.44 +0.3
856,874 - CA264_03665 0.45 -0.0
856,874 - CA264_03665 0.45 -0.5
856,939 + CA264_03665 0.51 -1.2
857,201 + CA264_03665 0.76 +0.3
857,202 - CA264_03665 0.76 +0.2
857,244 + CA264_03665 0.80 -0.4
857,251 - CA264_03665 0.80 -0.1
857,251 - CA264_03665 0.80 -0.6
857,258 + CA264_03665 0.81 -0.1
857,259 - CA264_03665 0.81 +0.2
857,402 - -0.1
857,402 - -0.1
857,455 + -0.8
857,456 - +0.2
857,481 - -0.1
857,536 + +0.3
857,538 + +0.4
857,538 + +0.5
857,566 - -0.7
857,746 - CA264_03670 0.36 +0.0
857,796 - CA264_03670 0.46 +0.4
857,840 + CA264_03670 0.54 +0.6
857,840 + CA264_03670 0.54 +0.9
857,926 - CA264_03670 0.70 +0.4
857,980 - CA264_03670 0.80 -0.3
858,063 + +1.2
858,063 + +0.3
858,064 - -0.1
858,086 + +0.6
858,086 + +0.4
858,086 + +0.3
858,090 - -0.0
858,090 - +0.1
858,115 - +1.1
858,158 - -0.1
858,158 - -0.4
858,190 - -0.1
858,229 - +0.3
858,250 + +0.7
858,278 + +0.6

Or see this region's nucleotide sequence