Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02615

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02610 and CA264_02615 are separated by 139 nucleotidesCA264_02615 and CA264_02620 overlap by 4 nucleotides CA264_02610: CA264_02610 - cation transporter, at 604,485 to 605,396 _02610 CA264_02615: CA264_02615 - DNA-binding response regulator, at 605,536 to 606,219 _02615 CA264_02620: CA264_02620 - two-component sensor histidine kinase, at 606,216 to 607,613 _02620 Position (kb) 605 606 607Strain fitness (log2 ratio) -2 -1 0 1 2at 604.539 kb on + strandat 604.539 kb on + strandat 604.539 kb on + strandat 604.548 kb on + strandat 604.548 kb on + strandat 604.651 kb on + strand, within CA264_02610at 604.651 kb on + strand, within CA264_02610at 604.652 kb on - strand, within CA264_02610at 604.704 kb on + strand, within CA264_02610at 604.706 kb on + strand, within CA264_02610at 604.739 kb on + strand, within CA264_02610at 604.739 kb on + strand, within CA264_02610at 604.740 kb on - strand, within CA264_02610at 604.804 kb on + strand, within CA264_02610at 604.805 kb on - strand, within CA264_02610at 604.874 kb on + strand, within CA264_02610at 604.995 kb on - strand, within CA264_02610at 605.034 kb on + strand, within CA264_02610at 605.035 kb on - strand, within CA264_02610at 605.035 kb on - strand, within CA264_02610at 605.079 kb on - strand, within CA264_02610at 605.142 kb on - strand, within CA264_02610at 605.195 kb on - strand, within CA264_02610at 605.266 kb on - strand, within CA264_02610at 605.292 kb on + strand, within CA264_02610at 605.292 kb on + strand, within CA264_02610at 605.293 kb on - strand, within CA264_02610at 605.397 kb on - strandat 605.397 kb on - strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.425 kb on - strandat 605.425 kb on - strandat 605.429 kb on - strandat 605.468 kb on + strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.517 kb on + strandat 605.517 kb on + strandat 605.517 kb on + strandat 605.518 kb on - strandat 605.608 kb on + strand, within CA264_02615at 605.608 kb on + strand, within CA264_02615at 605.609 kb on - strand, within CA264_02615at 605.609 kb on - strand, within CA264_02615at 605.626 kb on + strand, within CA264_02615at 605.627 kb on - strand, within CA264_02615at 605.645 kb on + strand, within CA264_02615at 605.645 kb on + strand, within CA264_02615at 605.828 kb on - strand, within CA264_02615at 605.858 kb on + strand, within CA264_02615at 605.858 kb on + strand, within CA264_02615at 605.859 kb on - strand, within CA264_02615at 606.016 kb on + strand, within CA264_02615at 606.059 kb on + strand, within CA264_02615at 606.059 kb on + strand, within CA264_02615at 606.060 kb on - strand, within CA264_02615at 606.140 kb on + strand, within CA264_02615at 606.172 kb on - strandat 606.191 kb on - strandat 606.236 kb on - strandat 606.295 kb on - strandat 606.302 kb on + strandat 606.303 kb on - strandat 606.303 kb on - strandat 606.313 kb on - strandat 606.371 kb on + strand, within CA264_02620at 606.391 kb on + strand, within CA264_02620at 606.391 kb on + strand, within CA264_02620at 606.391 kb on + strand, within CA264_02620at 606.392 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.516 kb on - strand, within CA264_02620at 606.620 kb on + strand, within CA264_02620at 606.649 kb on - strand, within CA264_02620

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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604,539 + +0.2
604,539 + -0.6
604,539 + -2.0
604,548 + -0.1
604,548 + -0.3
604,651 + CA264_02610 0.18 +0.7
604,651 + CA264_02610 0.18 -0.2
604,652 - CA264_02610 0.18 +0.7
604,704 + CA264_02610 0.24 +0.5
604,706 + CA264_02610 0.24 -0.2
604,739 + CA264_02610 0.28 -0.8
604,739 + CA264_02610 0.28 +1.2
604,740 - CA264_02610 0.28 +0.1
604,804 + CA264_02610 0.35 +0.1
604,805 - CA264_02610 0.35 -0.3
604,874 + CA264_02610 0.43 -0.8
604,995 - CA264_02610 0.56 +0.3
605,034 + CA264_02610 0.60 +0.1
605,035 - CA264_02610 0.60 -0.2
605,035 - CA264_02610 0.60 +0.8
605,079 - CA264_02610 0.65 +0.4
605,142 - CA264_02610 0.72 +1.0
605,195 - CA264_02610 0.78 -0.2
605,266 - CA264_02610 0.86 +0.6
605,292 + CA264_02610 0.88 +0.2
605,292 + CA264_02610 0.88 -0.4
605,293 - CA264_02610 0.89 +1.0
605,397 - -0.0
605,397 - +0.8
605,424 + +0.4
605,424 + -0.7
605,424 + +0.3
605,424 + +0.1
605,424 + +0.9
605,425 - +1.1
605,425 - +0.6
605,429 - -1.1
605,468 + +1.2
605,469 - +0.6
605,469 - -0.3
605,469 - +0.4
605,469 - +0.6
605,517 + +0.5
605,517 + -0.6
605,517 + +1.8
605,518 - +0.6
605,608 + CA264_02615 0.11 +0.9
605,608 + CA264_02615 0.11 -0.6
605,609 - CA264_02615 0.11 +1.2
605,609 - CA264_02615 0.11 +2.0
605,626 + CA264_02615 0.13 +1.1
605,627 - CA264_02615 0.13 -0.0
605,645 + CA264_02615 0.16 +0.4
605,645 + CA264_02615 0.16 +0.2
605,828 - CA264_02615 0.43 +0.4
605,858 + CA264_02615 0.47 +1.2
605,858 + CA264_02615 0.47 -0.2
605,859 - CA264_02615 0.47 +0.7
606,016 + CA264_02615 0.70 +1.0
606,059 + CA264_02615 0.76 +0.0
606,059 + CA264_02615 0.76 +0.2
606,060 - CA264_02615 0.77 +0.8
606,140 + CA264_02615 0.88 -0.3
606,172 - +0.4
606,191 - +1.2
606,236 - -0.5
606,295 - +0.8
606,302 + +0.7
606,303 - -0.2
606,303 - -1.1
606,313 - +1.2
606,371 + CA264_02620 0.11 -0.4
606,391 + CA264_02620 0.13 -0.2
606,391 + CA264_02620 0.13 -0.3
606,391 + CA264_02620 0.13 -0.0
606,392 - CA264_02620 0.13 -2.7
606,463 - CA264_02620 0.18 +0.6
606,463 - CA264_02620 0.18 +0.3
606,463 - CA264_02620 0.18 +1.0
606,463 - CA264_02620 0.18 +0.7
606,516 - CA264_02620 0.21 +0.7
606,620 + CA264_02620 0.29 +0.2
606,649 - CA264_02620 0.31 +0.2

Or see this region's nucleotide sequence