Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01680

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01670 and CA264_01675 are separated by 136 nucleotidesCA264_01675 and CA264_01680 are separated by 89 nucleotidesCA264_01680 and CA264_01685 are separated by 359 nucleotides CA264_01670: CA264_01670 - ABC transporter, at 392,255 to 394,132 _01670 CA264_01675: CA264_01675 - hypothetical protein, at 394,269 to 394,658 _01675 CA264_01680: CA264_01680 - RDD family protein, at 394,748 to 395,251 _01680 CA264_01685: CA264_01685 - glutamate racemase, at 395,611 to 396,426 _01685 Position (kb) 394 395 396Strain fitness (log2 ratio) -2 -1 0 1at 393.831 kb on + strand, within CA264_01670at 393.831 kb on + strand, within CA264_01670at 393.839 kb on + strand, within CA264_01670at 393.839 kb on + strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.953 kb on + strandat 393.954 kb on - strandat 393.954 kb on - strandat 394.106 kb on + strandat 394.121 kb on + strandat 394.125 kb on + strandat 394.256 kb on + strandat 394.347 kb on + strand, within CA264_01675at 394.347 kb on + strand, within CA264_01675at 394.348 kb on - strand, within CA264_01675at 394.349 kb on + strand, within CA264_01675at 394.356 kb on + strand, within CA264_01675at 394.356 kb on + strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.358 kb on + strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.400 kb on + strand, within CA264_01675at 394.401 kb on - strand, within CA264_01675at 394.401 kb on - strand, within CA264_01675at 394.495 kb on + strand, within CA264_01675at 394.515 kb on + strand, within CA264_01675at 394.516 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.529 kb on + strand, within CA264_01675at 394.563 kb on + strand, within CA264_01675at 394.597 kb on - strand, within CA264_01675at 394.618 kb on + strand, within CA264_01675at 394.618 kb on + strand, within CA264_01675at 394.619 kb on - strand, within CA264_01675at 394.623 kb on + strandat 394.623 kb on + strandat 394.623 kb on + strandat 394.659 kb on - strandat 394.662 kb on - strandat 394.728 kb on + strandat 394.749 kb on + strandat 394.866 kb on + strand, within CA264_01680at 394.933 kb on + strand, within CA264_01680at 394.978 kb on + strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 395.056 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.123 kb on + strand, within CA264_01680at 395.125 kb on + strand, within CA264_01680at 395.159 kb on + strand, within CA264_01680at 395.160 kb on - strand, within CA264_01680at 395.197 kb on - strand, within CA264_01680at 395.219 kb on - strandat 395.236 kb on + strandat 395.237 kb on - strandat 395.237 kb on - strandat 395.238 kb on + strandat 395.238 kb on + strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.239 kb on - strandat 395.269 kb on + strandat 395.270 kb on - strandat 395.281 kb on - strandat 395.293 kb on + strandat 395.293 kb on + strandat 395.293 kb on + strandat 395.306 kb on + strandat 395.306 kb on + strandat 395.307 kb on - strandat 395.344 kb on - strandat 395.374 kb on + strandat 395.392 kb on + strandat 395.543 kb on + strandat 395.557 kb on + strandat 395.561 kb on + strandat 395.562 kb on - strandat 395.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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393,831 + CA264_01670 0.84 -0.0
393,831 + CA264_01670 0.84 -0.8
393,839 + CA264_01670 0.84 -0.6
393,839 + CA264_01670 0.84 -1.5
393,885 - CA264_01670 0.87 -0.5
393,885 - CA264_01670 0.87 -1.7
393,885 - CA264_01670 0.87 +0.1
393,953 + -1.0
393,954 - -0.5
393,954 - -0.3
394,106 + -0.6
394,121 + -0.3
394,125 + -0.3
394,256 + -0.0
394,347 + CA264_01675 0.20 -0.3
394,347 + CA264_01675 0.20 +0.5
394,348 - CA264_01675 0.20 -0.5
394,349 + CA264_01675 0.21 +0.1
394,356 + CA264_01675 0.22 -1.3
394,356 + CA264_01675 0.22 +0.2
394,357 - CA264_01675 0.23 -0.3
394,357 - CA264_01675 0.23 +0.1
394,357 - CA264_01675 0.23 -0.1
394,358 + CA264_01675 0.23 +0.8
394,359 - CA264_01675 0.23 -0.2
394,359 - CA264_01675 0.23 -2.1
394,359 - CA264_01675 0.23 -0.4
394,400 + CA264_01675 0.34 +0.6
394,401 - CA264_01675 0.34 -0.2
394,401 - CA264_01675 0.34 +0.3
394,495 + CA264_01675 0.58 -0.4
394,515 + CA264_01675 0.63 -0.5
394,516 - CA264_01675 0.63 -1.3
394,527 - CA264_01675 0.66 +0.1
394,527 - CA264_01675 0.66 +0.3
394,527 - CA264_01675 0.66 +0.2
394,529 + CA264_01675 0.67 -0.4
394,563 + CA264_01675 0.75 +0.6
394,597 - CA264_01675 0.84 -0.6
394,618 + CA264_01675 0.89 -0.5
394,618 + CA264_01675 0.89 +0.6
394,619 - CA264_01675 0.90 +0.2
394,623 + +0.4
394,623 + -0.2
394,623 + -0.3
394,659 - +0.0
394,662 - -0.4
394,728 + +0.2
394,749 + +0.1
394,866 + CA264_01680 0.23 +1.4
394,933 + CA264_01680 0.37 -0.4
394,978 + CA264_01680 0.46 -0.1
394,979 - CA264_01680 0.46 -0.2
394,979 - CA264_01680 0.46 -0.1
394,979 - CA264_01680 0.46 -0.2
394,979 - CA264_01680 0.46 -0.2
394,980 + CA264_01680 0.46 -0.0
394,980 + CA264_01680 0.46 +0.1
394,980 + CA264_01680 0.46 -0.2
394,980 + CA264_01680 0.46 -0.2
394,980 + CA264_01680 0.46 +0.4
394,980 + CA264_01680 0.46 -0.0
394,980 + CA264_01680 0.46 +0.2
394,980 + CA264_01680 0.46 +0.6
394,981 - CA264_01680 0.46 -0.1
394,981 - CA264_01680 0.46 -0.1
394,981 - CA264_01680 0.46 +0.2
394,981 - CA264_01680 0.46 +0.3
394,983 + CA264_01680 0.47 -0.6
394,983 + CA264_01680 0.47 +0.3
395,056 + CA264_01680 0.61 -0.4
395,088 + CA264_01680 0.67 +0.4
395,088 + CA264_01680 0.67 -0.6
395,123 + CA264_01680 0.74 +0.1
395,125 + CA264_01680 0.75 -1.4
395,159 + CA264_01680 0.82 -0.1
395,160 - CA264_01680 0.82 -0.4
395,197 - CA264_01680 0.89 -1.5
395,219 - -0.4
395,236 + +0.2
395,237 - +0.6
395,237 - -0.3
395,238 + +1.1
395,238 + -0.1
395,239 - +0.0
395,239 - +0.5
395,239 - -0.0
395,239 - +1.4
395,269 + +1.7
395,270 - -0.4
395,281 - -1.1
395,293 + +0.3
395,293 + -1.6
395,293 + -0.8
395,306 + -0.4
395,306 + +0.4
395,307 - -0.1
395,344 - -0.5
395,374 + -1.5
395,392 + -0.4
395,543 + -0.3
395,557 + -0.1
395,561 + +0.1
395,562 - +1.4
395,610 + +0.1

Or see this region's nucleotide sequence