Experiment: m.b. Cobalt chloride 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01425 and CA264_01430 are separated by 27 nucleotides CA264_01430 and CA264_01435 overlap by 23 nucleotides CA264_01435 and CA264_01440 are separated by 8 nucleotides CA264_01440 and CA264_01445 are separated by 70 nucleotides CA264_01445 and CA264_01450 are separated by 173 nucleotides
CA264_01425: CA264_01425 - RelA/SpoT family protein, at 338,996 to 341,188
_01425
CA264_01430: CA264_01430 - transcriptional repressor, at 341,216 to 341,710
_01430
CA264_01435: CA264_01435 - anti-anti-sigma factor, at 341,688 to 342,038
_01435
CA264_01440: CA264_01440 - adenylosuccinate synthase, at 342,047 to 343,330
_01440
CA264_01445: CA264_01445 - hypothetical protein, at 343,401 to 343,970
_01445
CA264_01450: CA264_01450 - 16S ribosomal RNA, at 344,144 to 345,664
_01450
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1
2
3 at 341.162 kb on - strand at 341.197 kb on + strand at 341.198 kb on - strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.208 kb on + strand at 341.209 kb on - strand at 341.210 kb on + strand at 341.210 kb on + strand at 341.211 kb on - strand at 341.214 kb on + strand at 341.214 kb on + strand at 341.215 kb on - strand at 341.224 kb on - strand at 341.224 kb on - strand at 341.231 kb on - strand at 341.231 kb on - strand at 341.327 kb on + strand, within CA264_01430 at 341.411 kb on + strand, within CA264_01430 at 341.411 kb on + strand, within CA264_01430 at 341.576 kb on - strand, within CA264_01430 at 341.576 kb on - strand, within CA264_01430 at 341.634 kb on + strand, within CA264_01430 at 341.634 kb on + strand, within CA264_01430 at 341.635 kb on - strand, within CA264_01430 at 341.694 kb on + strand at 341.708 kb on + strand at 341.709 kb on - strand at 341.796 kb on + strand, within CA264_01435 at 341.797 kb on - strand, within CA264_01435 at 341.835 kb on - strand, within CA264_01435 at 341.924 kb on + strand, within CA264_01435 at 341.959 kb on + strand, within CA264_01435 at 343.328 kb on + strand at 343.329 kb on - strand at 343.329 kb on - strand at 343.333 kb on - strand at 343.704 kb on - strand, within CA264_01445
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM remove 341,162 - -1.7 341,197 + -0.3 341,198 - -0.5 341,199 + -1.5 341,199 + -0.6 341,199 + -0.5 341,199 + +1.6 341,199 + -0.9 341,200 - -0.3 341,200 - -0.3 341,200 - -0.1 341,200 - -0.5 341,200 - +0.4 341,200 - -0.2 341,200 - +0.6 341,200 - +0.5 341,201 + -0.4 341,201 + -0.5 341,201 + -0.6 341,201 + +0.2 341,201 + +0.3 341,202 - -0.0 341,202 - -0.4 341,202 - +0.4 341,202 - -0.4 341,202 - -0.2 341,202 - -0.4 341,203 + -0.7 341,203 + +1.9 341,203 + +0.1 341,203 + +0.3 341,203 + -0.1 341,203 + -0.7 341,203 + +0.1 341,203 + +0.2 341,203 + -0.4 341,204 - -0.0 341,204 - -0.9 341,204 - -0.4 341,204 - +0.1 341,204 - +1.3 341,204 - +1.4 341,204 - -0.5 341,204 - +0.2 341,204 - -0.6 341,204 - -0.3 341,204 - +0.8 341,208 + -0.1 341,209 - +0.4 341,210 + -0.0 341,210 + +0.0 341,211 - +0.1 341,214 + -0.2 341,214 + -0.5 341,215 - -0.2 341,224 - +0.9 341,224 - -0.5 341,231 - +3.2 341,231 - +2.9 341,327 + CA264_01430 0.22 +2.7 341,411 + CA264_01430 0.39 +2.7 341,411 + CA264_01430 0.39 +2.9 341,576 - CA264_01430 0.73 +2.8 341,576 - CA264_01430 0.73 +2.1 341,634 + CA264_01430 0.84 +2.9 341,634 + CA264_01430 0.84 +2.6 341,635 - CA264_01430 0.85 +2.6 341,694 + -0.3 341,708 + +0.0 341,709 - +0.3 341,796 + CA264_01435 0.31 -0.0 341,797 - CA264_01435 0.31 -0.1 341,835 - CA264_01435 0.42 +0.3 341,924 + CA264_01435 0.67 -0.3 341,959 + CA264_01435 0.77 -0.9 343,328 + -0.1 343,329 - -0.2 343,329 - +0.0 343,333 - -0.3 343,704 - CA264_01445 0.53 -0.2
Or see this region's nucleotide sequence