Strain Fitness in Agrobacterium fabrum C58 around Atu6181

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6179 and Atu6180 are separated by 2 nucleotidesAtu6180 and Atu6181 are separated by 270 nucleotidesAtu6181 and Atu6182 are separated by 33 nucleotides Atu6179: Atu6179 - virA/G regulated protein, at 194,449 to 195,057 Atu6179 Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755 Atu6180 Atu6181: Atu6181 - virA/G regulated topoisomerase, at 196,026 to 196,469 Atu6181 Atu6182: Atu6182 - endonuclease, at 196,503 to 197,846 Atu6182 Position (kb) 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 195.040 kb on - strandat 195.059 kb on - strandat 195.066 kb on + strandat 195.066 kb on + strandat 195.074 kb on - strandat 195.074 kb on - strandat 195.074 kb on - strandat 195.104 kb on - strandat 195.165 kb on - strand, within Atu6180at 195.237 kb on - strand, within Atu6180at 195.239 kb on + strand, within Atu6180at 195.245 kb on - strand, within Atu6180at 195.272 kb on - strand, within Atu6180at 195.318 kb on - strand, within Atu6180at 195.326 kb on - strand, within Atu6180at 195.415 kb on - strand, within Atu6180at 195.415 kb on - strand, within Atu6180at 195.415 kb on - strand, within Atu6180at 195.418 kb on + strand, within Atu6180at 195.434 kb on + strand, within Atu6180at 195.434 kb on + strand, within Atu6180at 195.434 kb on + strand, within Atu6180at 195.442 kb on - strand, within Atu6180at 195.452 kb on - strand, within Atu6180at 195.476 kb on - strand, within Atu6180at 195.523 kb on - strand, within Atu6180at 195.525 kb on + strand, within Atu6180at 195.533 kb on - strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.535 kb on + strand, within Atu6180at 195.536 kb on + strand, within Atu6180at 195.569 kb on - strand, within Atu6180at 195.589 kb on + strand, within Atu6180at 195.589 kb on - strand, within Atu6180at 195.589 kb on - strand, within Atu6180at 195.633 kb on + strand, within Atu6180at 195.700 kb on - strandat 195.993 kb on + strandat 196.036 kb on + strandat 196.037 kb on - strandat 196.044 kb on - strandat 196.048 kb on + strandat 196.071 kb on - strand, within Atu6181at 196.104 kb on - strand, within Atu6181at 196.178 kb on + strand, within Atu6181at 196.185 kb on + strand, within Atu6181at 196.192 kb on + strand, within Atu6181at 196.210 kb on + strand, within Atu6181at 196.266 kb on - strand, within Atu6181at 196.289 kb on - strand, within Atu6181at 196.289 kb on - strand, within Atu6181at 196.289 kb on - strand, within Atu6181at 196.312 kb on - strand, within Atu6181at 196.386 kb on + strand, within Atu6181at 196.396 kb on - strand, within Atu6181at 196.459 kb on - strandat 196.459 kb on - strandat 196.459 kb on - strandat 196.480 kb on + strandat 196.566 kb on - strandat 196.606 kb on + strandat 196.606 kb on + strandat 196.606 kb on + strandat 196.614 kb on - strandat 196.614 kb on - strandat 196.692 kb on - strand, within Atu6182at 196.694 kb on - strand, within Atu6182at 196.740 kb on - strand, within Atu6182at 196.747 kb on - strand, within Atu6182at 196.777 kb on + strand, within Atu6182at 196.785 kb on - strand, within Atu6182at 196.785 kb on - strand, within Atu6182at 196.814 kb on - strand, within Atu6182at 196.829 kb on - strand, within Atu6182at 196.845 kb on + strand, within Atu6182at 196.853 kb on - strand, within Atu6182at 196.880 kb on - strand, within Atu6182at 196.899 kb on + strand, within Atu6182at 196.899 kb on + strand, within Atu6182at 196.902 kb on - strand, within Atu6182at 196.976 kb on - strand, within Atu6182at 197.032 kb on + strand, within Atu6182at 197.034 kb on - strand, within Atu6182at 197.040 kb on - strand, within Atu6182at 197.055 kb on - strand, within Atu6182at 197.075 kb on + strand, within Atu6182at 197.075 kb on + strand, within Atu6182at 197.083 kb on + strand, within Atu6182at 197.083 kb on - strand, within Atu6182at 197.091 kb on - strand, within Atu6182at 197.121 kb on + strand, within Atu6182at 197.121 kb on + strand, within Atu6182at 197.154 kb on - strand, within Atu6182at 197.156 kb on + strand, within Atu6182at 197.193 kb on + strand, within Atu6182at 197.230 kb on + strand, within Atu6182at 197.291 kb on + strand, within Atu6182at 197.353 kb on + strand, within Atu6182at 197.418 kb on + strand, within Atu6182at 197.425 kb on + strand, within Atu6182at 197.426 kb on - strand, within Atu6182at 197.430 kb on + strand, within Atu6182at 197.445 kb on - strand, within Atu6182

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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195,040 - -0.1
195,059 - +1.6
195,066 + -0.0
195,066 + +0.6
195,074 - -0.0
195,074 - -0.3
195,074 - +0.8
195,104 - +0.9
195,165 - Atu6180 0.15 +1.0
195,237 - Atu6180 0.25 +1.2
195,239 + Atu6180 0.26 +1.0
195,245 - Atu6180 0.27 +0.8
195,272 - Atu6180 0.30 +1.6
195,318 - Atu6180 0.37 -1.3
195,326 - Atu6180 0.38 +0.0
195,415 - Atu6180 0.51 +1.0
195,415 - Atu6180 0.51 +0.2
195,415 - Atu6180 0.51 +1.3
195,418 + Atu6180 0.51 -0.1
195,434 + Atu6180 0.54 +1.3
195,434 + Atu6180 0.54 -0.6
195,434 + Atu6180 0.54 -2.0
195,442 - Atu6180 0.55 -0.6
195,452 - Atu6180 0.56 -0.2
195,476 - Atu6180 0.60 -0.7
195,523 - Atu6180 0.67 -0.1
195,525 + Atu6180 0.67 -0.6
195,533 - Atu6180 0.68 -0.0
195,535 + Atu6180 0.68 -0.9
195,535 + Atu6180 0.68 -0.8
195,535 + Atu6180 0.68 +0.2
195,535 + Atu6180 0.68 -0.5
195,536 + Atu6180 0.68 -0.2
195,569 - Atu6180 0.73 +0.6
195,589 + Atu6180 0.76 -0.2
195,589 - Atu6180 0.76 +0.5
195,589 - Atu6180 0.76 +0.0
195,633 + Atu6180 0.82 +0.3
195,700 - +0.7
195,993 + -0.4
196,036 + +0.8
196,037 - -0.6
196,044 - -0.4
196,048 + -0.0
196,071 - Atu6181 0.10 -0.2
196,104 - Atu6181 0.18 -0.3
196,178 + Atu6181 0.34 +1.6
196,185 + Atu6181 0.36 -0.3
196,192 + Atu6181 0.37 +1.3
196,210 + Atu6181 0.41 +0.4
196,266 - Atu6181 0.54 +0.9
196,289 - Atu6181 0.59 +1.1
196,289 - Atu6181 0.59 -0.0
196,289 - Atu6181 0.59 +1.0
196,312 - Atu6181 0.64 +0.7
196,386 + Atu6181 0.81 +0.6
196,396 - Atu6181 0.83 +1.0
196,459 - -1.5
196,459 - -1.0
196,459 - -1.0
196,480 + -1.2
196,566 - -0.0
196,606 + -0.7
196,606 + -0.1
196,606 + +0.2
196,614 - +0.7
196,614 - -1.2
196,692 - Atu6182 0.14 -0.8
196,694 - Atu6182 0.14 +0.3
196,740 - Atu6182 0.18 -1.0
196,747 - Atu6182 0.18 +2.6
196,777 + Atu6182 0.20 -0.4
196,785 - Atu6182 0.21 +1.0
196,785 - Atu6182 0.21 -0.5
196,814 - Atu6182 0.23 +1.3
196,829 - Atu6182 0.24 +0.1
196,845 + Atu6182 0.25 +0.1
196,853 - Atu6182 0.26 +1.3
196,880 - Atu6182 0.28 +0.4
196,899 + Atu6182 0.29 +0.3
196,899 + Atu6182 0.29 -0.5
196,902 - Atu6182 0.30 -0.4
196,976 - Atu6182 0.35 -0.2
197,032 + Atu6182 0.39 +0.3
197,034 - Atu6182 0.40 +0.4
197,040 - Atu6182 0.40 -0.7
197,055 - Atu6182 0.41 -0.2
197,075 + Atu6182 0.43 +0.2
197,075 + Atu6182 0.43 -0.8
197,083 + Atu6182 0.43 -0.1
197,083 - Atu6182 0.43 -0.3
197,091 - Atu6182 0.44 -0.2
197,121 + Atu6182 0.46 -0.1
197,121 + Atu6182 0.46 -0.6
197,154 - Atu6182 0.48 -2.1
197,156 + Atu6182 0.49 -0.0
197,193 + Atu6182 0.51 -0.2
197,230 + Atu6182 0.54 -0.0
197,291 + Atu6182 0.59 +0.3
197,353 + Atu6182 0.63 -1.3
197,418 + Atu6182 0.68 +0.3
197,425 + Atu6182 0.69 -0.3
197,426 - Atu6182 0.69 -1.5
197,430 + Atu6182 0.69 -0.4
197,445 - Atu6182 0.70 +0.5

Or see this region's nucleotide sequence