Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6096 and Atu6097 overlap by 40 nucleotides Atu6097 and Atu6098 overlap by 4 nucleotides Atu6098 and Atu6099 are separated by 380 nucleotides
Atu6096: Atu6096 - conserved hypothetical protein, at 116,838 to 117,917
Atu6096
Atu6097: Atu6097 - cell filamentation protein, at 117,878 to 118,474
Atu6097
Atu6098: Atu6098 - transcriptional regulator, HTH family, at 118,471 to 118,932
Atu6098
Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915
Atu6099
Position (kb) 117
118
119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.918 kb on + strand at 116.926 kb on - strand at 116.926 kb on - strand at 117.014 kb on - strand, within Atu6096 at 117.018 kb on + strand, within Atu6096 at 117.020 kb on + strand, within Atu6096 at 117.037 kb on + strand, within Atu6096 at 117.050 kb on + strand, within Atu6096 at 117.053 kb on - strand, within Atu6096 at 117.060 kb on + strand, within Atu6096 at 117.073 kb on + strand, within Atu6096 at 117.144 kb on + strand, within Atu6096 at 117.232 kb on + strand, within Atu6096 at 117.425 kb on + strand, within Atu6096 at 117.487 kb on - strand, within Atu6096 at 117.505 kb on + strand, within Atu6096 at 117.510 kb on + strand, within Atu6096 at 117.513 kb on - strand, within Atu6096 at 117.520 kb on + strand, within Atu6096 at 117.794 kb on + strand, within Atu6096 at 117.794 kb on + strand, within Atu6096 at 117.869 kb on + strand at 117.869 kb on + strand at 117.874 kb on + strand at 117.877 kb on - strand at 117.877 kb on - strand at 117.911 kb on + strand at 117.937 kb on - strand at 117.956 kb on + strand, within Atu6097 at 117.979 kb on - strand, within Atu6097 at 118.000 kb on - strand, within Atu6097 at 118.039 kb on + strand, within Atu6097 at 118.127 kb on + strand, within Atu6097 at 118.127 kb on + strand, within Atu6097 at 118.128 kb on + strand, within Atu6097 at 118.135 kb on - strand, within Atu6097 at 118.135 kb on - strand, within Atu6097 at 118.214 kb on - strand, within Atu6097 at 118.250 kb on - strand, within Atu6097 at 118.294 kb on - strand, within Atu6097 at 118.297 kb on + strand, within Atu6097 at 118.331 kb on + strand, within Atu6097 at 118.400 kb on + strand, within Atu6097 at 118.411 kb on + strand, within Atu6097 at 118.423 kb on + strand at 118.423 kb on + strand at 118.423 kb on + strand at 118.428 kb on + strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.436 kb on - strand at 118.438 kb on + strand at 118.446 kb on - strand at 118.446 kb on - strand at 118.513 kb on + strand at 118.513 kb on + strand at 118.858 kb on - strand, within Atu6098 at 118.947 kb on - strand at 119.092 kb on + strand at 119.167 kb on + strand at 119.167 kb on + strand at 119.175 kb on - strand at 119.191 kb on + strand at 119.248 kb on - strand at 119.295 kb on + strand at 119.397 kb on + strand, within Atu6099 at 119.397 kb on + strand, within Atu6099 at 119.405 kb on - strand, within Atu6099 at 119.455 kb on - strand, within Atu6099
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 116,918 + +0.3 116,918 + +0.6 116,918 + +0.1 116,918 + +0.7 116,918 + -0.0 116,918 + -0.1 116,926 - +0.2 116,926 - -0.4 117,014 - Atu6096 0.16 +1.2 117,018 + Atu6096 0.17 -1.0 117,020 + Atu6096 0.17 -0.5 117,037 + Atu6096 0.18 +1.6 117,050 + Atu6096 0.20 -0.3 117,053 - Atu6096 0.20 +0.4 117,060 + Atu6096 0.21 +1.0 117,073 + Atu6096 0.22 -0.7 117,144 + Atu6096 0.28 -0.3 117,232 + Atu6096 0.36 +0.3 117,425 + Atu6096 0.54 +0.8 117,487 - Atu6096 0.60 +0.6 117,505 + Atu6096 0.62 +0.3 117,510 + Atu6096 0.62 +0.2 117,513 - Atu6096 0.62 +0.2 117,520 + Atu6096 0.63 +1.5 117,794 + Atu6096 0.89 -0.2 117,794 + Atu6096 0.89 -0.0 117,869 + +0.6 117,869 + +0.0 117,874 + +0.3 117,877 - +0.6 117,877 - +0.6 117,911 + -0.1 117,937 - -0.1 117,956 + Atu6097 0.13 -1.0 117,979 - Atu6097 0.17 -0.6 118,000 - Atu6097 0.20 +0.7 118,039 + Atu6097 0.27 +0.4 118,127 + Atu6097 0.42 -0.9 118,127 + Atu6097 0.42 -1.2 118,128 + Atu6097 0.42 -0.9 118,135 - Atu6097 0.43 -0.8 118,135 - Atu6097 0.43 +0.1 118,214 - Atu6097 0.56 -1.2 118,250 - Atu6097 0.62 -2.2 118,294 - Atu6097 0.70 +0.2 118,297 + Atu6097 0.70 -0.2 118,331 + Atu6097 0.76 +0.1 118,400 + Atu6097 0.87 -0.4 118,411 + Atu6097 0.89 -0.5 118,423 + +2.6 118,423 + +0.1 118,423 + +1.1 118,428 + +0.0 118,431 - -1.2 118,431 - +0.2 118,431 - +0.4 118,431 - -0.8 118,436 - +0.9 118,438 + +0.1 118,446 - +2.4 118,446 - +0.3 118,513 + -1.0 118,513 + -0.3 118,858 - Atu6098 0.84 -0.2 118,947 - -0.0 119,092 + +0.2 119,167 + -1.4 119,167 + +0.0 119,175 - -0.6 119,191 + +0.9 119,248 - +1.4 119,295 + -0.0 119,397 + Atu6099 0.14 -0.9 119,397 + Atu6099 0.14 -0.2 119,405 - Atu6099 0.15 +0.6 119,455 - Atu6099 0.24 -1.0
Or see this region's nucleotide sequence