Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5473 and Atu5474 are separated by 61 nucleotides
Atu5473: Atu5473 - D-alanine aminotransferase, at 465,274 to 466,146
Atu5473
Atu5474: Atu5474 - 2-hydroxyacid dehydrogenase, at 466,208 to 467,143
Atu5474
Position (kb) 465
466
467 Strain fitness (log2 ratio) -1
0
1
2 at 465.235 kb on - strand at 465.328 kb on + strand at 465.358 kb on - strand at 465.360 kb on - strand at 465.406 kb on + strand, within Atu5473 at 465.406 kb on + strand, within Atu5473 at 465.487 kb on + strand, within Atu5473 at 465.487 kb on + strand, within Atu5473 at 465.520 kb on + strand, within Atu5473 at 465.574 kb on + strand, within Atu5473 at 465.607 kb on + strand, within Atu5473 at 465.607 kb on + strand, within Atu5473 at 465.627 kb on + strand, within Atu5473 at 465.770 kb on + strand, within Atu5473 at 465.778 kb on - strand, within Atu5473 at 465.833 kb on + strand, within Atu5473 at 465.847 kb on - strand, within Atu5473 at 465.865 kb on + strand, within Atu5473 at 465.873 kb on - strand, within Atu5473 at 465.881 kb on + strand, within Atu5473 at 465.926 kb on + strand, within Atu5473 at 465.957 kb on + strand, within Atu5473 at 465.969 kb on + strand, within Atu5473 at 466.069 kb on + strand at 466.099 kb on + strand at 466.135 kb on + strand at 466.150 kb on + strand at 466.150 kb on + strand at 466.181 kb on - strand at 466.206 kb on + strand at 466.209 kb on - strand at 466.211 kb on - strand at 466.243 kb on + strand at 466.248 kb on + strand at 466.271 kb on + strand at 466.275 kb on - strand at 466.350 kb on + strand, within Atu5474 at 466.358 kb on - strand, within Atu5474 at 466.358 kb on - strand, within Atu5474 at 466.431 kb on + strand, within Atu5474 at 466.478 kb on + strand, within Atu5474 at 466.491 kb on + strand, within Atu5474 at 466.499 kb on - strand, within Atu5474 at 466.518 kb on + strand, within Atu5474 at 466.536 kb on - strand, within Atu5474 at 466.557 kb on + strand, within Atu5474 at 466.616 kb on + strand, within Atu5474 at 466.690 kb on - strand, within Atu5474 at 466.707 kb on + strand, within Atu5474 at 466.719 kb on - strand, within Atu5474 at 466.752 kb on + strand, within Atu5474 at 466.807 kb on - strand, within Atu5474 at 466.832 kb on + strand, within Atu5474 at 466.835 kb on - strand, within Atu5474 at 466.853 kb on + strand, within Atu5474 at 466.909 kb on + strand, within Atu5474 at 466.922 kb on - strand, within Atu5474 at 466.987 kb on + strand, within Atu5474 at 467.094 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 465,235 - -1.0 465,328 + -0.4 465,358 - -0.3 465,360 - -0.3 465,406 + Atu5473 0.15 -0.6 465,406 + Atu5473 0.15 +0.8 465,487 + Atu5473 0.24 -1.4 465,487 + Atu5473 0.24 +0.2 465,520 + Atu5473 0.28 -0.1 465,574 + Atu5473 0.34 -1.0 465,607 + Atu5473 0.38 -0.2 465,607 + Atu5473 0.38 -1.1 465,627 + Atu5473 0.40 +0.4 465,770 + Atu5473 0.57 +0.3 465,778 - Atu5473 0.58 -1.1 465,833 + Atu5473 0.64 -0.6 465,847 - Atu5473 0.66 -0.6 465,865 + Atu5473 0.68 +0.4 465,873 - Atu5473 0.69 -0.6 465,881 + Atu5473 0.70 -1.2 465,926 + Atu5473 0.75 -1.6 465,957 + Atu5473 0.78 -0.1 465,969 + Atu5473 0.80 -1.2 466,069 + -0.0 466,099 + -0.8 466,135 + +1.1 466,150 + +0.7 466,150 + -0.2 466,181 - -0.8 466,206 + +1.4 466,209 - -0.7 466,211 - -0.1 466,243 + -0.5 466,248 + +0.1 466,271 + +0.0 466,275 - -0.8 466,350 + Atu5474 0.15 +0.7 466,358 - Atu5474 0.16 -0.1 466,358 - Atu5474 0.16 +1.1 466,431 + Atu5474 0.24 -1.2 466,478 + Atu5474 0.29 -0.8 466,491 + Atu5474 0.30 -0.0 466,499 - Atu5474 0.31 +0.4 466,518 + Atu5474 0.33 +0.6 466,536 - Atu5474 0.35 -0.9 466,557 + Atu5474 0.37 -0.2 466,616 + Atu5474 0.44 +0.4 466,690 - Atu5474 0.51 +0.1 466,707 + Atu5474 0.53 +2.1 466,719 - Atu5474 0.55 +0.0 466,752 + Atu5474 0.58 +0.8 466,807 - Atu5474 0.64 +0.0 466,832 + Atu5474 0.67 -1.6 466,835 - Atu5474 0.67 -0.0 466,853 + Atu5474 0.69 +0.1 466,909 + Atu5474 0.75 -1.3 466,922 - Atu5474 0.76 +2.0 466,987 + Atu5474 0.83 +0.2 467,094 + -1.2
Or see this region's nucleotide sequence