Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5045 and Atu5046 are separated by 356 nucleotides Atu5046 and Atu5047 are separated by 0 nucleotides Atu5047 and Atu5048 are separated by 84 nucleotides Atu5048 and Atu8099 are separated by 11 nucleotides
Atu5045: Atu5045 - hypothetical protein, at 45,460 to 46,200
Atu5045
Atu5046: Atu5046 - hypothetical protein, at 46,557 to 46,904
Atu5046
Atu5047: Atu5047 - hypothetical protein, at 46,905 to 47,141
Atu5047
Atu5048: Atu5048 - exodeoxyribonuclease III, at 47,226 to 48,002
Atu5048
Atu8099: Atu8099 - hypothetical protein, at 48,014 to 48,190
Atu8099
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1 at 46.308 kb on + strand at 46.323 kb on - strand at 46.425 kb on - strand at 46.444 kb on + strand at 46.455 kb on - strand at 46.455 kb on - strand at 46.520 kb on + strand at 46.529 kb on + strand at 46.585 kb on + strand at 46.633 kb on + strand, within Atu5046 at 46.729 kb on - strand, within Atu5046 at 46.764 kb on + strand, within Atu5046 at 46.792 kb on + strand, within Atu5046 at 46.800 kb on - strand, within Atu5046 at 46.857 kb on - strand, within Atu5046 at 46.945 kb on + strand, within Atu5047 at 46.953 kb on - strand, within Atu5047 at 46.965 kb on - strand, within Atu5047 at 46.989 kb on - strand, within Atu5047 at 46.993 kb on - strand, within Atu5047 at 47.027 kb on + strand, within Atu5047 at 47.059 kb on + strand, within Atu5047 at 47.125 kb on - strand at 47.157 kb on - strand at 47.157 kb on - strand at 47.170 kb on - strand at 47.188 kb on + strand at 47.240 kb on + strand at 47.240 kb on + strand at 47.245 kb on + strand at 47.253 kb on - strand at 47.253 kb on - strand at 47.275 kb on + strand at 47.283 kb on - strand at 47.307 kb on + strand, within Atu5048 at 47.307 kb on + strand, within Atu5048 at 47.315 kb on - strand, within Atu5048 at 47.315 kb on - strand, within Atu5048 at 47.327 kb on + strand, within Atu5048 at 47.327 kb on + strand, within Atu5048 at 47.327 kb on - strand, within Atu5048 at 47.335 kb on - strand, within Atu5048 at 47.417 kb on + strand, within Atu5048 at 47.446 kb on + strand, within Atu5048 at 47.455 kb on + strand, within Atu5048 at 47.459 kb on - strand, within Atu5048 at 47.469 kb on + strand, within Atu5048 at 47.477 kb on - strand, within Atu5048 at 47.477 kb on - strand, within Atu5048 at 47.491 kb on + strand, within Atu5048 at 47.491 kb on + strand, within Atu5048 at 47.494 kb on - strand, within Atu5048 at 47.598 kb on - strand, within Atu5048 at 47.600 kb on + strand, within Atu5048 at 47.608 kb on - strand, within Atu5048 at 47.622 kb on - strand, within Atu5048 at 47.622 kb on - strand, within Atu5048 at 47.622 kb on - strand, within Atu5048 at 47.622 kb on - strand, within Atu5048 at 47.652 kb on + strand, within Atu5048 at 47.786 kb on + strand, within Atu5048 at 47.925 kb on - strand at 47.954 kb on - strand at 47.973 kb on - strand at 48.017 kb on + strand at 48.038 kb on + strand, within Atu8099 at 48.103 kb on + strand, within Atu8099 at 48.126 kb on + strand, within Atu8099
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 46,308 + +0.4 46,323 - -0.4 46,425 - +0.7 46,444 + -0.4 46,455 - -0.3 46,455 - +0.6 46,520 + +0.3 46,529 + -0.9 46,585 + +0.1 46,633 + Atu5046 0.22 +0.1 46,729 - Atu5046 0.49 -0.5 46,764 + Atu5046 0.59 -0.2 46,792 + Atu5046 0.68 +0.3 46,800 - Atu5046 0.70 -0.8 46,857 - Atu5046 0.86 -1.6 46,945 + Atu5047 0.17 -1.7 46,953 - Atu5047 0.20 -0.9 46,965 - Atu5047 0.25 -0.6 46,989 - Atu5047 0.35 -1.9 46,993 - Atu5047 0.37 +0.2 47,027 + Atu5047 0.51 -0.7 47,059 + Atu5047 0.65 -0.3 47,125 - +1.1 47,157 - -0.8 47,157 - -0.3 47,170 - -0.5 47,188 + -0.2 47,240 + +0.4 47,240 + -0.4 47,245 + +0.3 47,253 - +0.6 47,253 - -1.3 47,275 + -0.7 47,283 - -1.8 47,307 + Atu5048 0.10 +1.7 47,307 + Atu5048 0.10 +0.3 47,315 - Atu5048 0.11 -0.2 47,315 - Atu5048 0.11 +0.3 47,327 + Atu5048 0.13 +0.6 47,327 + Atu5048 0.13 -0.7 47,327 - Atu5048 0.13 +0.1 47,335 - Atu5048 0.14 -0.4 47,417 + Atu5048 0.25 +1.1 47,446 + Atu5048 0.28 -0.2 47,455 + Atu5048 0.29 +0.8 47,459 - Atu5048 0.30 +0.0 47,469 + Atu5048 0.31 +0.1 47,477 - Atu5048 0.32 +0.2 47,477 - Atu5048 0.32 +0.4 47,491 + Atu5048 0.34 +0.9 47,491 + Atu5048 0.34 +1.0 47,494 - Atu5048 0.34 -0.9 47,598 - Atu5048 0.48 +0.3 47,600 + Atu5048 0.48 -0.6 47,608 - Atu5048 0.49 -0.1 47,622 - Atu5048 0.51 +0.8 47,622 - Atu5048 0.51 +1.3 47,622 - Atu5048 0.51 -0.7 47,622 - Atu5048 0.51 -0.2 47,652 + Atu5048 0.55 -0.6 47,786 + Atu5048 0.72 -0.2 47,925 - -1.6 47,954 - -0.6 47,973 - +0.1 48,017 + -1.1 48,038 + Atu8099 0.14 -0.5 48,103 + Atu8099 0.50 -0.3 48,126 + Atu8099 0.63 +0.6
Or see this region's nucleotide sequence