Strain Fitness in Agrobacterium fabrum C58 around Atu3954

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,056,796	+				-0.5
1,056,796	-				+0.4
1,056,926	+		Atu3953	0.19	+0.0
1,057,003	-		Atu3953	0.26	-0.3
1,057,020	-		Atu3953	0.28	+0.8
1,057,027	+		Atu3953	0.29	+0.3
1,057,090	-		Atu3953	0.35	-0.2
1,057,228	-		Atu3953	0.49	+0.3
1,057,437	-		Atu3953	0.70	-0.1
1,057,596	+		Atu3953	0.86	-0.3
1,057,609	-		Atu3953	0.87	-2.7
1,057,705	+				+0.1
1,057,738	+				-2.3
1,057,750	+				-0.1
1,057,758	-				+0.3
1,057,758	-				+0.5
1,057,797	-				+0.3
1,057,802	+				-0.8
1,057,802	+				+1.5
1,057,838	+				+0.0
1,057,865	+		Atu3954	0.12	-0.2
1,057,951	-		Atu3954	0.22	-0.8
1,057,971	+		Atu3954	0.24	-1.3
1,057,971	+		Atu3954	0.24	+1.9
1,057,979	-		Atu3954	0.25	+0.3
1,057,984	-		Atu3954	0.26	-0.5
1,058,035	+		Atu3954	0.32	+0.1
1,058,085	+		Atu3954	0.38	-0.2
1,058,093	-		Atu3954	0.38	-0.1
1,058,107	-		Atu3954	0.40	+0.3
1,058,125	+		Atu3954	0.42	-0.7
1,058,195	-		Atu3954	0.50	-0.0
1,058,200	-		Atu3954	0.51	+0.1
1,058,212	+		Atu3954	0.52	+0.2
1,058,213	+		Atu3954	0.53	-1.4
1,058,222	+		Atu3954	0.54	-0.9
1,058,222	+		Atu3954	0.54	-1.2
1,058,230	-		Atu3954	0.55	-0.7
1,058,271	+		Atu3954	0.59	-1.1
1,058,279	-		Atu3954	0.60	+0.2
1,058,311	-		Atu3954	0.64	-0.2
1,058,318	+		Atu3954	0.65	-0.4
1,058,328	+		Atu3954	0.66	+0.3
1,058,336	-		Atu3954	0.67	-0.6
1,058,407	+		Atu3954	0.75	-0.2
1,058,454	+		Atu3954	0.81	+0.6
1,058,468	+		Atu3954	0.83	-0.5
1,058,476	-		Atu3954	0.83	-0.7
1,058,483	+		Atu3954	0.84	+0.3
1,058,491	-		Atu3954	0.85	-0.7
1,058,568	-				+0.5
1,058,597	-				+0.1
1,058,651	+				+0.0
1,058,651	+				+0.5
1,058,651	+				+0.1
1,058,659	-				-0.8
1,058,659	-				-1.0
1,058,659	-				+0.2
1,058,664	-				-0.6
1,058,669	-				+0.6
1,058,669	-				-0.3
1,058,703	+		Atu3955	0.11	-0.8
1,058,838	+		Atu3955	0.27	+0.2
1,058,846	-		Atu3955	0.27	-1.7
1,059,013	-		Atu3955	0.47	+0.5
1,059,048	+		Atu3955	0.51	-0.8
1,059,058	+		Atu3955	0.52	-0.2
1,059,065	-		Atu3955	0.53	-0.0
1,059,066	-		Atu3955	0.53	+0.3
1,059,196	+		Atu3955	0.69	+0.1
1,059,204	-		Atu3955	0.70	-0.1
1,059,227	-		Atu3955	0.72	+0.1
1,059,283	+		Atu3955	0.79	+0.0
1,059,311	+		Atu3955	0.82	+0.1
1,059,311	+		Atu3955	0.82	-2.5
1,059,324	-		Atu3955	0.84	-0.4
1,059,348	+		Atu3955	0.87	-0.3
1,059,348	+		Atu3955	0.87	-0.4
1,059,388	-				-0.2
1,059,468	-				+0.2
1,059,503	+				-2.1
1,059,511	-				+0.2
1,059,511	-				+1.3
1,059,525	+				-1.0
1,059,585	+		Atu3956	0.10	+0.4