Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3845 and Atu3846 are separated by 20 nucleotides Atu3846 and Atu3847 are separated by 68 nucleotides Atu3847 and Atu3848 are separated by 388 nucleotides Atu3848 and Atu3849 are separated by 153 nucleotides
Atu3845: Atu3845 - hypothetical protein, at 939,216 to 939,896
Atu3845
Atu3846: Atu3846 - hypothetical protein, at 939,917 to 940,357
Atu3846
Atu3847: Atu3847 - hypothetical protein, at 940,426 to 940,947
Atu3847
Atu3848: Atu3848 - hypothetical protein, at 941,336 to 941,629
Atu3848
Atu3849: Atu3849 - resolvase, at 941,783 to 942,415
Atu3849
Position (kb) 940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 939.430 kb on + strand, within Atu3845 at 939.469 kb on + strand, within Atu3845 at 939.546 kb on - strand, within Atu3845 at 939.560 kb on + strand, within Atu3845 at 939.573 kb on - strand, within Atu3845 at 939.578 kb on + strand, within Atu3845 at 939.601 kb on + strand, within Atu3845 at 939.623 kb on - strand, within Atu3845 at 939.677 kb on + strand, within Atu3845 at 939.691 kb on + strand, within Atu3845 at 939.879 kb on + strand at 939.887 kb on - strand at 939.887 kb on - strand at 939.887 kb on - strand at 939.909 kb on - strand at 939.913 kb on - strand at 939.920 kb on + strand at 939.928 kb on + strand at 939.987 kb on + strand, within Atu3846 at 939.995 kb on - strand, within Atu3846 at 939.995 kb on - strand, within Atu3846 at 940.067 kb on + strand, within Atu3846 at 940.075 kb on - strand, within Atu3846 at 940.077 kb on + strand, within Atu3846 at 940.083 kb on - strand, within Atu3846 at 940.189 kb on + strand, within Atu3846 at 940.197 kb on - strand, within Atu3846 at 940.197 kb on - strand, within Atu3846 at 940.197 kb on - strand, within Atu3846 at 940.297 kb on - strand, within Atu3846 at 940.335 kb on - strand at 940.340 kb on - strand at 940.402 kb on - strand at 940.417 kb on + strand at 940.469 kb on - strand at 940.514 kb on - strand, within Atu3847 at 940.514 kb on - strand, within Atu3847 at 940.633 kb on + strand, within Atu3847 at 940.686 kb on + strand, within Atu3847 at 940.688 kb on + strand, within Atu3847 at 940.694 kb on - strand, within Atu3847 at 940.722 kb on + strand, within Atu3847 at 940.784 kb on - strand, within Atu3847 at 940.820 kb on - strand, within Atu3847 at 940.883 kb on - strand, within Atu3847 at 941.011 kb on + strand at 941.064 kb on + strand at 941.089 kb on + strand at 941.313 kb on + strand at 941.320 kb on + strand at 941.328 kb on + strand at 941.328 kb on - strand at 941.333 kb on + strand at 941.341 kb on - strand at 941.341 kb on - strand at 941.401 kb on - strand, within Atu3848 at 941.461 kb on - strand, within Atu3848 at 941.461 kb on - strand, within Atu3848 at 941.461 kb on - strand, within Atu3848 at 941.464 kb on + strand, within Atu3848 at 941.506 kb on + strand, within Atu3848 at 941.508 kb on - strand, within Atu3848 at 941.508 kb on - strand, within Atu3848 at 941.512 kb on + strand, within Atu3848 at 941.583 kb on - strand, within Atu3848 at 941.624 kb on + strand at 941.626 kb on - strand at 941.626 kb on - strand at 941.725 kb on + strand at 941.733 kb on - strand at 941.773 kb on + strand at 941.814 kb on + strand at 941.819 kb on + strand at 941.822 kb on - strand at 941.846 kb on - strand at 941.856 kb on - strand, within Atu3849 at 941.928 kb on + strand, within Atu3849
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 939,430 + Atu3845 0.31 +0.4 939,469 + Atu3845 0.37 +1.1 939,546 - Atu3845 0.48 -0.1 939,560 + Atu3845 0.51 +0.4 939,573 - Atu3845 0.52 +0.5 939,578 + Atu3845 0.53 +0.1 939,601 + Atu3845 0.57 -0.3 939,623 - Atu3845 0.60 -0.9 939,677 + Atu3845 0.68 -0.7 939,691 + Atu3845 0.70 -0.3 939,879 + -1.0 939,887 - -1.7 939,887 - +0.4 939,887 - -0.2 939,909 - -0.1 939,913 - +0.2 939,920 + +0.1 939,928 + -0.3 939,987 + Atu3846 0.16 -0.6 939,995 - Atu3846 0.18 +0.4 939,995 - Atu3846 0.18 +0.0 940,067 + Atu3846 0.34 +0.5 940,075 - Atu3846 0.36 -0.3 940,077 + Atu3846 0.36 +0.3 940,083 - Atu3846 0.38 -0.6 940,189 + Atu3846 0.62 +0.4 940,197 - Atu3846 0.63 +0.5 940,197 - Atu3846 0.63 +0.1 940,197 - Atu3846 0.63 -0.8 940,297 - Atu3846 0.86 +0.7 940,335 - +0.1 940,340 - +0.6 940,402 - -1.4 940,417 + +0.3 940,469 - +0.3 940,514 - Atu3847 0.17 -0.1 940,514 - Atu3847 0.17 +0.1 940,633 + Atu3847 0.40 -1.2 940,686 + Atu3847 0.50 -0.8 940,688 + Atu3847 0.50 -1.1 940,694 - Atu3847 0.51 -0.2 940,722 + Atu3847 0.57 -0.2 940,784 - Atu3847 0.69 -1.1 940,820 - Atu3847 0.75 -0.8 940,883 - Atu3847 0.88 -0.6 941,011 + +0.5 941,064 + -0.3 941,089 + +0.0 941,313 + +0.3 941,320 + +0.6 941,328 + -0.9 941,328 - -0.7 941,333 + +0.3 941,341 - -0.8 941,341 - -1.1 941,401 - Atu3848 0.22 -0.4 941,461 - Atu3848 0.43 +0.1 941,461 - Atu3848 0.43 +0.1 941,461 - Atu3848 0.43 -0.1 941,464 + Atu3848 0.44 -0.3 941,506 + Atu3848 0.58 -0.0 941,508 - Atu3848 0.59 +0.3 941,508 - Atu3848 0.59 +0.0 941,512 + Atu3848 0.60 -0.6 941,583 - Atu3848 0.84 -0.6 941,624 + -0.5 941,626 - +0.1 941,626 - -0.1 941,725 + -0.3 941,733 - -3.4 941,773 + -0.1 941,814 + -0.4 941,819 + -0.3 941,822 - -0.8 941,846 - +0.4 941,856 - Atu3849 0.12 -0.2 941,928 + Atu3849 0.23 +0.2
Or see this region's nucleotide sequence