Strain Fitness in Agrobacterium fabrum C58 around Atu3791

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3790 and Atu3791 are separated by 552 nucleotidesAtu3791 and Atu3792 overlap by 4 nucleotides Atu3790: Atu3790 - potassium-transporting ATPase subunit A, at 881,007 to 882,710 Atu3790 Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216 Atu3791 Atu3792: Atu3792 - L-asparagine permease, at 884,213 to 885,670 Atu3792 Position (kb) 883 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1at 882.269 kb on - strand, within Atu3790at 882.319 kb on + strand, within Atu3790at 882.319 kb on + strand, within Atu3790at 882.332 kb on - strand, within Atu3790at 882.428 kb on + strand, within Atu3790at 882.488 kb on - strand, within Atu3790at 882.510 kb on + strand, within Atu3790at 882.525 kb on + strand, within Atu3790at 882.550 kb on - strandat 882.558 kb on + strandat 882.558 kb on + strandat 882.560 kb on - strandat 882.566 kb on - strandat 882.654 kb on - strandat 882.654 kb on - strandat 882.712 kb on + strandat 882.712 kb on - strandat 882.784 kb on + strandat 882.848 kb on + strandat 882.911 kb on + strandat 882.919 kb on - strandat 882.919 kb on - strandat 882.919 kb on - strandat 882.945 kb on + strandat 882.953 kb on - strandat 882.968 kb on + strandat 882.987 kb on + strandat 883.116 kb on + strandat 883.161 kb on + strandat 883.231 kb on - strandat 883.307 kb on - strandat 883.347 kb on + strandat 883.347 kb on + strandat 883.350 kb on - strandat 883.355 kb on - strandat 883.372 kb on - strand, within Atu3791at 883.434 kb on - strand, within Atu3791at 883.489 kb on - strand, within Atu3791at 883.489 kb on - strand, within Atu3791at 883.517 kb on - strand, within Atu3791at 883.524 kb on - strand, within Atu3791at 883.576 kb on - strand, within Atu3791at 883.627 kb on + strand, within Atu3791at 883.635 kb on - strand, within Atu3791at 883.635 kb on - strand, within Atu3791at 883.677 kb on - strand, within Atu3791at 883.784 kb on - strand, within Atu3791at 883.885 kb on + strand, within Atu3791at 883.885 kb on + strand, within Atu3791at 883.909 kb on + strand, within Atu3791at 883.942 kb on + strand, within Atu3791at 884.036 kb on - strand, within Atu3791at 884.037 kb on + strand, within Atu3791at 884.038 kb on + strand, within Atu3791at 884.065 kb on + strand, within Atu3791at 884.065 kb on + strand, within Atu3791at 884.065 kb on + strand, within Atu3791at 884.073 kb on - strand, within Atu3791at 884.080 kb on - strand, within Atu3791at 884.108 kb on - strand, within Atu3791at 884.120 kb on + strand, within Atu3791at 884.197 kb on + strandat 884.197 kb on + strandat 884.197 kb on + strandat 884.197 kb on + strandat 884.205 kb on - strandat 884.205 kb on - strandat 884.224 kb on + strandat 884.224 kb on + strandat 884.275 kb on + strandat 884.280 kb on - strandat 884.407 kb on - strand, within Atu3792at 884.532 kb on - strand, within Atu3792at 884.552 kb on + strand, within Atu3792at 884.572 kb on - strand, within Atu3792at 884.625 kb on - strand, within Atu3792at 884.743 kb on - strand, within Atu3792at 884.778 kb on - strand, within Atu3792at 884.810 kb on - strand, within Atu3792at 884.837 kb on - strand, within Atu3792at 884.837 kb on - strand, within Atu3792at 884.842 kb on - strand, within Atu3792at 884.922 kb on - strand, within Atu3792at 884.937 kb on - strand, within Atu3792at 884.986 kb on - strand, within Atu3792at 885.134 kb on + strand, within Atu3792at 885.151 kb on + strand, within Atu3792at 885.154 kb on - strand, within Atu3792

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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882,269 - Atu3790 0.74 -0.1
882,319 + Atu3790 0.77 -0.5
882,319 + Atu3790 0.77 -0.3
882,332 - Atu3790 0.78 -0.3
882,428 + Atu3790 0.83 -1.0
882,488 - Atu3790 0.87 -0.2
882,510 + Atu3790 0.88 +0.0
882,525 + Atu3790 0.89 +0.7
882,550 - -0.3
882,558 + +0.0
882,558 + -0.7
882,560 - +0.1
882,566 - +0.3
882,654 - -0.9
882,654 - +0.4
882,712 + +0.5
882,712 - +0.1
882,784 + -1.1
882,848 + +0.5
882,911 + -0.0
882,919 - +0.6
882,919 - -0.8
882,919 - +0.2
882,945 + -0.0
882,953 - -1.3
882,968 + +0.0
882,987 + -2.6
883,116 + +0.4
883,161 + +0.5
883,231 - +0.7
883,307 - -1.8
883,347 + -2.3
883,347 + -0.8
883,350 - -0.8
883,355 - +0.2
883,372 - Atu3791 0.11 -1.4
883,434 - Atu3791 0.18 -0.9
883,489 - Atu3791 0.24 -0.8
883,489 - Atu3791 0.24 -1.1
883,517 - Atu3791 0.27 -0.2
883,524 - Atu3791 0.27 -0.1
883,576 - Atu3791 0.33 -0.4
883,627 + Atu3791 0.38 -0.1
883,635 - Atu3791 0.39 -0.2
883,635 - Atu3791 0.39 -0.4
883,677 - Atu3791 0.43 +1.5
883,784 - Atu3791 0.55 -0.3
883,885 + Atu3791 0.65 -1.2
883,885 + Atu3791 0.65 +0.0
883,909 + Atu3791 0.68 -0.9
883,942 + Atu3791 0.71 -1.7
884,036 - Atu3791 0.81 -0.9
884,037 + Atu3791 0.81 -0.2
884,038 + Atu3791 0.81 -1.2
884,065 + Atu3791 0.84 -1.1
884,065 + Atu3791 0.84 -0.3
884,065 + Atu3791 0.84 -0.1
884,073 - Atu3791 0.85 -0.2
884,080 - Atu3791 0.86 -2.0
884,108 - Atu3791 0.89 -1.3
884,120 + Atu3791 0.90 -0.0
884,197 + -1.0
884,197 + -3.2
884,197 + -1.2
884,197 + +0.3
884,205 - -0.0
884,205 - -0.1
884,224 + -0.7
884,224 + -0.2
884,275 + -0.4
884,280 - +0.4
884,407 - Atu3792 0.13 -0.9
884,532 - Atu3792 0.22 +0.4
884,552 + Atu3792 0.23 -0.4
884,572 - Atu3792 0.25 +0.3
884,625 - Atu3792 0.28 -0.2
884,743 - Atu3792 0.36 -1.1
884,778 - Atu3792 0.39 -1.4
884,810 - Atu3792 0.41 -0.6
884,837 - Atu3792 0.43 -0.6
884,837 - Atu3792 0.43 +0.1
884,842 - Atu3792 0.43 -0.2
884,922 - Atu3792 0.49 +0.3
884,937 - Atu3792 0.50 -0.4
884,986 - Atu3792 0.53 -0.1
885,134 + Atu3792 0.63 -0.6
885,151 + Atu3792 0.64 -0.7
885,154 - Atu3792 0.65 -0.3

Or see this region's nucleotide sequence