Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3675 and Atu3676 overlap by 4 nucleotides Atu3676 and Atu3677 overlap by 4 nucleotides
Atu3675: Atu3675 - peptide synthetase, siderophore biosynthesis protein, at 729,769 to 734,331
Atu3675
Atu3676: Atu3676 - siderophore biosynthesis protein, at 734,328 to 735,224
Atu3676
Atu3677: Atu3677 - polyketide synthase, at 735,221 to 736,696
Atu3677
Position (kb) 734
735
736 Strain fitness (log2 ratio) -1
0
1
2 at 733.328 kb on - strand, within Atu3675 at 733.329 kb on - strand, within Atu3675 at 733.370 kb on - strand, within Atu3675 at 733.485 kb on - strand, within Atu3675 at 733.488 kb on - strand, within Atu3675 at 733.491 kb on + strand, within Atu3675 at 733.514 kb on + strand, within Atu3675 at 733.586 kb on + strand, within Atu3675 at 733.640 kb on - strand, within Atu3675 at 733.698 kb on + strand, within Atu3675 at 733.801 kb on + strand, within Atu3675 at 733.819 kb on - strand, within Atu3675 at 733.837 kb on - strand, within Atu3675 at 733.845 kb on + strand, within Atu3675 at 733.847 kb on - strand, within Atu3675 at 733.859 kb on - strand, within Atu3675 at 733.864 kb on - strand, within Atu3675 at 733.878 kb on - strand at 733.879 kb on - strand at 733.921 kb on + strand at 733.957 kb on + strand at 734.154 kb on - strand at 734.208 kb on - strand at 734.237 kb on + strand at 734.335 kb on + strand at 734.335 kb on + strand at 734.337 kb on + strand at 734.343 kb on - strand at 734.386 kb on + strand at 734.400 kb on - strand at 734.464 kb on - strand, within Atu3676 at 734.464 kb on - strand, within Atu3676 at 734.518 kb on - strand, within Atu3676 at 734.637 kb on - strand, within Atu3676 at 734.663 kb on - strand, within Atu3676 at 734.663 kb on - strand, within Atu3676 at 734.692 kb on + strand, within Atu3676 at 734.717 kb on - strand, within Atu3676 at 734.797 kb on - strand, within Atu3676 at 734.810 kb on - strand, within Atu3676 at 734.889 kb on + strand, within Atu3676 at 734.906 kb on + strand, within Atu3676 at 734.940 kb on + strand, within Atu3676 at 735.046 kb on - strand, within Atu3676 at 735.068 kb on - strand, within Atu3676 at 735.161 kb on - strand at 735.161 kb on - strand at 735.192 kb on + strand at 735.200 kb on - strand at 735.264 kb on - strand at 735.455 kb on - strand, within Atu3677 at 735.537 kb on + strand, within Atu3677 at 735.563 kb on - strand, within Atu3677 at 735.604 kb on + strand, within Atu3677 at 735.711 kb on - strand, within Atu3677 at 735.752 kb on + strand, within Atu3677 at 735.752 kb on + strand, within Atu3677 at 735.760 kb on - strand, within Atu3677 at 735.817 kb on - strand, within Atu3677 at 735.817 kb on - strand, within Atu3677 at 735.927 kb on - strand, within Atu3677 at 735.960 kb on - strand, within Atu3677 at 735.966 kb on + strand, within Atu3677 at 736.006 kb on - strand, within Atu3677 at 736.006 kb on - strand, within Atu3677 at 736.117 kb on + strand, within Atu3677 at 736.217 kb on + strand, within Atu3677
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 733,328 - Atu3675 0.78 -0.2 733,329 - Atu3675 0.78 +0.4 733,370 - Atu3675 0.79 -0.1 733,485 - Atu3675 0.81 -0.1 733,488 - Atu3675 0.82 +0.7 733,491 + Atu3675 0.82 -1.4 733,514 + Atu3675 0.82 +0.3 733,586 + Atu3675 0.84 +0.4 733,640 - Atu3675 0.85 +0.1 733,698 + Atu3675 0.86 -0.1 733,801 + Atu3675 0.88 +0.0 733,819 - Atu3675 0.89 +0.1 733,837 - Atu3675 0.89 +0.2 733,845 + Atu3675 0.89 +0.2 733,847 - Atu3675 0.89 +0.1 733,859 - Atu3675 0.90 +0.1 733,864 - Atu3675 0.90 +0.3 733,878 - -0.3 733,879 - -0.5 733,921 + -0.2 733,957 + +0.7 734,154 - +1.4 734,208 - -1.1 734,237 + -0.1 734,335 + -0.0 734,335 + +0.5 734,337 + +1.0 734,343 - +0.5 734,386 + -0.4 734,400 - +1.0 734,464 - Atu3676 0.15 +0.2 734,464 - Atu3676 0.15 +0.3 734,518 - Atu3676 0.21 +0.4 734,637 - Atu3676 0.34 +0.3 734,663 - Atu3676 0.37 +1.0 734,663 - Atu3676 0.37 +0.5 734,692 + Atu3676 0.41 +0.3 734,717 - Atu3676 0.43 +0.3 734,797 - Atu3676 0.52 +0.4 734,810 - Atu3676 0.54 +0.4 734,889 + Atu3676 0.63 -0.9 734,906 + Atu3676 0.64 +0.4 734,940 + Atu3676 0.68 -1.4 735,046 - Atu3676 0.80 +0.2 735,068 - Atu3676 0.82 +1.0 735,161 - +0.2 735,161 - -0.2 735,192 + -0.2 735,200 - +0.1 735,264 - +1.8 735,455 - Atu3677 0.16 -0.1 735,537 + Atu3677 0.21 -0.0 735,563 - Atu3677 0.23 +0.3 735,604 + Atu3677 0.26 -0.9 735,711 - Atu3677 0.33 -1.0 735,752 + Atu3677 0.36 +0.3 735,752 + Atu3677 0.36 +0.2 735,760 - Atu3677 0.37 +0.0 735,817 - Atu3677 0.40 +0.1 735,817 - Atu3677 0.40 -0.6 735,927 - Atu3677 0.48 +0.3 735,960 - Atu3677 0.50 -0.5 735,966 + Atu3677 0.50 +0.4 736,006 - Atu3677 0.53 -1.1 736,006 - Atu3677 0.53 -0.2 736,117 + Atu3677 0.61 -0.6 736,217 + Atu3677 0.67 +0.0
Or see this region's nucleotide sequence