Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3089 and Atu3090 are separated by 225 nucleotides Atu3090 and Atu3091 are separated by 191 nucleotides
Atu3089: Atu3089 - spermidine/putrescine ABC transporter ATPase, at 94,885 to 95,970
Atu3089
Atu3090: Atu3090 - DNA polymerase III subunit epsilon, at 96,196 to 97,176
Atu3090
Atu3091: Atu3091 - hypothetical protein, at 97,368 to 98,270
Atu3091
Position (kb) 96
97
98 Strain fitness (log2 ratio) -1
0
1
2 at 95.378 kb on + strand, within Atu3089 at 95.384 kb on - strand, within Atu3089 at 95.431 kb on + strand, within Atu3089 at 95.475 kb on - strand, within Atu3089 at 95.497 kb on - strand, within Atu3089 at 95.577 kb on + strand, within Atu3089 at 95.629 kb on - strand, within Atu3089 at 95.676 kb on - strand, within Atu3089 at 95.722 kb on + strand, within Atu3089 at 95.766 kb on + strand, within Atu3089 at 95.818 kb on + strand, within Atu3089 at 95.960 kb on + strand at 95.968 kb on - strand at 95.968 kb on - strand at 96.203 kb on + strand at 96.203 kb on + strand at 96.222 kb on - strand at 96.237 kb on - strand at 96.429 kb on + strand, within Atu3090 at 96.443 kb on + strand, within Atu3090 at 96.443 kb on + strand, within Atu3090 at 96.497 kb on + strand, within Atu3090 at 96.544 kb on + strand, within Atu3090 at 96.585 kb on + strand, within Atu3090 at 96.615 kb on - strand, within Atu3090 at 96.629 kb on + strand, within Atu3090 at 96.637 kb on - strand, within Atu3090 at 96.703 kb on + strand, within Atu3090 at 96.777 kb on - strand, within Atu3090 at 96.836 kb on + strand, within Atu3090 at 96.880 kb on + strand, within Atu3090 at 97.013 kb on - strand, within Atu3090 at 97.013 kb on - strand, within Atu3090 at 97.013 kb on - strand, within Atu3090 at 97.089 kb on - strand at 97.100 kb on - strand at 97.289 kb on + strand at 97.296 kb on + strand at 97.297 kb on - strand at 97.297 kb on - strand at 97.299 kb on - strand at 97.560 kb on - strand, within Atu3091 at 97.570 kb on - strand, within Atu3091 at 97.570 kb on - strand, within Atu3091 at 97.625 kb on + strand, within Atu3091 at 97.733 kb on + strand, within Atu3091 at 97.733 kb on + strand, within Atu3091 at 97.796 kb on - strand, within Atu3091 at 97.801 kb on - strand, within Atu3091 at 97.803 kb on + strand, within Atu3091 at 97.858 kb on + strand, within Atu3091 at 97.925 kb on - strand, within Atu3091 at 97.964 kb on + strand, within Atu3091 at 97.970 kb on - strand, within Atu3091 at 97.972 kb on - strand, within Atu3091
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 95,378 + Atu3089 0.45 +0.8 95,384 - Atu3089 0.46 +0.1 95,431 + Atu3089 0.50 +0.4 95,475 - Atu3089 0.54 -0.1 95,497 - Atu3089 0.56 -0.4 95,577 + Atu3089 0.64 +0.4 95,629 - Atu3089 0.69 -0.1 95,676 - Atu3089 0.73 +2.2 95,722 + Atu3089 0.77 +0.1 95,766 + Atu3089 0.81 +0.4 95,818 + Atu3089 0.86 +0.9 95,960 + -0.0 95,968 - +0.1 95,968 - -0.3 96,203 + -0.6 96,203 + +0.1 96,222 - -0.0 96,237 - -0.2 96,429 + Atu3090 0.24 -0.1 96,443 + Atu3090 0.25 +0.6 96,443 + Atu3090 0.25 +0.2 96,497 + Atu3090 0.31 +0.1 96,544 + Atu3090 0.35 +0.9 96,585 + Atu3090 0.40 -0.2 96,615 - Atu3090 0.43 +0.2 96,629 + Atu3090 0.44 +1.3 96,637 - Atu3090 0.45 +1.1 96,703 + Atu3090 0.52 +0.0 96,777 - Atu3090 0.59 -0.1 96,836 + Atu3090 0.65 +0.3 96,880 + Atu3090 0.70 +0.1 97,013 - Atu3090 0.83 +0.7 97,013 - Atu3090 0.83 -0.1 97,013 - Atu3090 0.83 -0.1 97,089 - -1.4 97,100 - +1.4 97,289 + +0.3 97,296 + -0.0 97,297 - +0.7 97,297 - +0.2 97,299 - +0.1 97,560 - Atu3091 0.21 +1.4 97,570 - Atu3091 0.22 -0.3 97,570 - Atu3091 0.22 +0.3 97,625 + Atu3091 0.28 +0.0 97,733 + Atu3091 0.40 -1.1 97,733 + Atu3091 0.40 -0.5 97,796 - Atu3091 0.47 +0.2 97,801 - Atu3091 0.48 +0.2 97,803 + Atu3091 0.48 +0.1 97,858 + Atu3091 0.54 +0.1 97,925 - Atu3091 0.62 +0.3 97,964 + Atu3091 0.66 -0.8 97,970 - Atu3091 0.67 +0.1 97,972 - Atu3091 0.67 +0.8
Or see this region's nucleotide sequence