Strain Fitness in Agrobacterium fabrum C58 around Atu2249
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | LB |
|---|---|---|---|---|---|
| remove | |||||
| 2,220,947 | + | +0.1 | |||
| 2,220,975 | + | +0.5 | |||
| 2,220,977 | + | +0.4 | |||
| 2,221,060 | - | Atu2248 | 0.16 | -0.5 | |
| 2,221,153 | + | Atu2248 | 0.51 | +0.2 | |
| 2,221,285 | + | -0.6 | |||
| 2,221,285 | + | +0.3 | |||
| 2,221,285 | + | -0.1 | |||
| 2,221,358 | + | +1.2 | |||
| 2,221,360 | - | +0.6 | |||
| 2,221,374 | + | -0.7 | |||
| 2,221,374 | + | +0.2 | |||
| 2,221,376 | - | -0.7 | |||
| 2,221,382 | - | -0.4 | |||
| 2,221,424 | + | Atu2249 | 0.15 | +0.4 | |
| 2,221,589 | + | -1.2 |
Or see this region's nucleotide sequence