Strain Fitness in Agrobacterium fabrum C58 around Atu1144

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1142 and Atu1143 are separated by 2 nucleotidesAtu1143 and Atu1144 are separated by 101 nucleotidesAtu1144 and Atu1145 overlap by 4 nucleotides Atu1142: Atu1142 - permease, at 1,130,984 to 1,132,141 Atu1142 Atu1143: Atu1143 - hypothetical protein, at 1,132,144 to 1,132,872 Atu1143 Atu1144: Atu1144 - polyphosphate kinase, at 1,132,974 to 1,135,172 Atu1144 Atu1145: Atu1145 - exopolyphosphatase, at 1,135,169 to 1,136,692 Atu1145 Position (kb) 1132 1133 1134 1135 1136Strain fitness (log2 ratio) -2 -1 0 1at 1132.148 kb on - strandat 1132.916 kb on + strandat 1132.934 kb on - strandat 1132.970 kb on + strandat 1132.978 kb on - strandat 1133.033 kb on + strandat 1133.680 kb on - strand, within Atu1144at 1134.083 kb on - strand, within Atu1144at 1134.145 kb on + strand, within Atu1144at 1136.096 kb on + strand, within Atu1145

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,132,148 - -2.5
1,132,916 + -0.8
1,132,934 - +1.5
1,132,970 + +0.2
1,132,978 - +0.2
1,133,033 + -0.3
1,133,680 - Atu1144 0.32 +0.5
1,134,083 - Atu1144 0.50 -1.4
1,134,145 + Atu1144 0.53 +1.3
1,136,096 + Atu1145 0.61 -0.7

Or see this region's nucleotide sequence