Strain Fitness in Agrobacterium fabrum C58 around Atu0910

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0909 and Atu0910 overlap by 4 nucleotidesAtu0910 and Atu0911 overlap by 1 nucleotidesAtu0911 and Atu0912 are separated by 19 nucleotides Atu0909: Atu0909 - Na+/H+ antiporter, at 898,920 to 901,289 Atu0909 Atu0910: Atu0910 - Na+/H+ antiporter, at 901,286 to 901,705 Atu0910 Atu0911: Atu0911 - Na+/H+ antiporter, at 901,705 to 902,082 Atu0911 Atu0912: Atu0912 - Na+/H+ antiporter, at 902,102 to 903,679 Atu0912 Position (kb) 901 902Strain fitness (log2 ratio) -2 -1 0 1at 902.039 kb on + strand, within Atu0911

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
902,039 + Atu0911 0.88 -1.9

Or see this region's nucleotide sequence