Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0907 and Atu0908 are separated by 86 nucleotides Atu0908 and Atu0909 are separated by 201 nucleotides Atu0909 and Atu0910 overlap by 4 nucleotides Atu0910 and Atu0911 overlap by 1 nucleotides Atu0911 and Atu0912 are separated by 19 nucleotides
Atu0907: Atu0907 - Phosphinothricin acetyltransferase, at 897,727 to 898,224
Atu0907
Atu0908: Atu0908 - transcriptional regulator, at 898,311 to 898,718
Atu0908
Atu0909: Atu0909 - Na+/H+ antiporter, at 898,920 to 901,289
Atu0909
Atu0910: Atu0910 - Na+/H+ antiporter, at 901,286 to 901,705
Atu0910
Atu0911: Atu0911 - Na+/H+ antiporter, at 901,705 to 902,082
Atu0911
Atu0912: Atu0912 - Na+/H+ antiporter, at 902,102 to 903,679
Atu0912
Position (kb) 898
899
900
901
902 Strain fitness (log2 ratio) -2
-1
0
1 at 897.958 kb on - strand, within Atu0907 at 897.964 kb on + strand, within Atu0907 at 898.108 kb on + strand, within Atu0907 at 898.130 kb on - strand, within Atu0907 at 898.202 kb on + strand at 898.202 kb on + strand at 898.202 kb on + strand at 898.210 kb on - strand at 898.217 kb on - strand at 898.227 kb on + strand at 898.249 kb on + strand at 898.326 kb on - strand at 898.429 kb on - strand, within Atu0908 at 898.468 kb on - strand, within Atu0908 at 898.569 kb on - strand, within Atu0908 at 898.669 kb on + strand, within Atu0908 at 898.693 kb on + strand at 898.694 kb on - strand at 898.720 kb on + strand at 902.039 kb on + strand, within Atu0911
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 897,958 - Atu0907 0.46 +0.5 897,964 + Atu0907 0.48 +0.3 898,108 + Atu0907 0.77 -0.5 898,130 - Atu0907 0.81 +0.6 898,202 + +0.8 898,202 + -1.0 898,202 + +0.6 898,210 - -0.9 898,217 - -0.3 898,227 + +0.3 898,249 + -0.6 898,326 - -0.4 898,429 - Atu0908 0.29 -1.3 898,468 - Atu0908 0.38 -0.8 898,569 - Atu0908 0.63 -0.1 898,669 + Atu0908 0.88 -0.2 898,693 + -0.1 898,694 - -0.1 898,720 + -0.5 902,039 + Atu0911 0.88 -1.9
Or see this region's nucleotide sequence