Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8012 and Atu0743 are separated by 92 nucleotides Atu0743 and Atu0744 are separated by 107 nucleotides Atu0744 and Atu0745 are separated by 42 nucleotides
Atu8012: Atu8012 - hypothetical protein, at 741,116 to 741,337
Atu8012
Atu0743: Atu0743 - hypothetical protein, at 741,430 to 742,224
Atu0743
Atu0744: Atu0744 - hypothetical protein, at 742,332 to 742,694
Atu0744
Atu0745: Atu0745 - 1-deoxy-D-xylulose-5-phosphate synthase, at 742,737 to 744,656
Atu0745
Position (kb) 742
743 Strain fitness (log2 ratio) -1
0
1 at 741.339 kb on + strand at 741.347 kb on - strand at 741.349 kb on - strand at 741.415 kb on - strand at 741.426 kb on + strand at 741.456 kb on - strand at 741.508 kb on - strand at 741.537 kb on - strand, within Atu0743 at 741.556 kb on + strand, within Atu0743 at 741.562 kb on - strand, within Atu0743 at 741.688 kb on - strand, within Atu0743 at 741.800 kb on + strand, within Atu0743 at 741.808 kb on - strand, within Atu0743 at 741.822 kb on + strand, within Atu0743 at 741.908 kb on - strand, within Atu0743 at 741.968 kb on - strand, within Atu0743 at 741.986 kb on + strand, within Atu0743 at 741.996 kb on + strand, within Atu0743 at 742.119 kb on - strand, within Atu0743 at 742.158 kb on + strand at 742.166 kb on - strand at 742.191 kb on + strand at 742.233 kb on + strand at 742.258 kb on + strand at 742.266 kb on - strand at 742.322 kb on - strand at 742.358 kb on + strand at 742.393 kb on - strand, within Atu0744 at 742.426 kb on - strand, within Atu0744 at 742.498 kb on - strand, within Atu0744 at 742.634 kb on + strand, within Atu0744 at 742.660 kb on - strand at 742.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 741,339 + +0.4 741,347 - -0.1 741,349 - +0.8 741,415 - -0.8 741,426 + -0.3 741,456 - +0.1 741,508 - -0.7 741,537 - Atu0743 0.13 +0.2 741,556 + Atu0743 0.16 -0.1 741,562 - Atu0743 0.17 -0.2 741,688 - Atu0743 0.32 -0.1 741,800 + Atu0743 0.47 +0.4 741,808 - Atu0743 0.48 +0.2 741,822 + Atu0743 0.49 -0.3 741,908 - Atu0743 0.60 +0.6 741,968 - Atu0743 0.68 +0.5 741,986 + Atu0743 0.70 +0.4 741,996 + Atu0743 0.71 -0.5 742,119 - Atu0743 0.87 +1.7 742,158 + +0.1 742,166 - +0.1 742,191 + +0.2 742,233 + -0.9 742,258 + -0.4 742,266 - -1.1 742,322 - +1.6 742,358 + -0.5 742,393 - Atu0744 0.17 +0.3 742,426 - Atu0744 0.26 -0.2 742,498 - Atu0744 0.46 +0.1 742,634 + Atu0744 0.83 +1.2 742,660 - +1.5 742,691 - +0.2
Or see this region's nucleotide sequence