Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0506 and Atu0507 are separated by 9 nucleotides Atu0507 and Atu0508 overlap by 4 nucleotides Atu0508 and Atu0509 overlap by 4 nucleotides Atu0509 and Atu0510 overlap by 1 nucleotides
Atu0506: Atu0506 - hypothetical protein, at 496,545 to 497,132
Atu0506
Atu0507: Atu0507 - potassium efflux system protein, at 497,142 to 497,486
Atu0507
Atu0508: Atu0508 - PH Adaption potassium efflux system, at 497,483 to 497,764
Atu0508
Atu0509: Atu0509 - phaE protein, at 497,761 to 498,246
Atu0509
Atu0510: Atu0510 - pH adaption potassium efflux system protein, at 498,246 to 499,889
Atu0510
Position (kb) 497
498 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 496.504 kb on + strand at 496.512 kb on - strand at 496.612 kb on - strand, within Atu0506 at 496.658 kb on - strand, within Atu0506 at 496.663 kb on - strand, within Atu0506 at 496.665 kb on + strand, within Atu0506 at 496.665 kb on + strand, within Atu0506 at 496.673 kb on - strand, within Atu0506 at 496.705 kb on + strand, within Atu0506 at 496.799 kb on - strand, within Atu0506 at 496.809 kb on + strand, within Atu0506 at 496.890 kb on - strand, within Atu0506 at 496.989 kb on + strand, within Atu0506 at 496.994 kb on + strand, within Atu0506 at 497.062 kb on + strand, within Atu0506 at 497.063 kb on + strand, within Atu0506 at 497.087 kb on + strand at 497.109 kb on + strand at 497.131 kb on + strand at 497.192 kb on + strand, within Atu0507 at 497.210 kb on + strand, within Atu0507 at 497.210 kb on + strand, within Atu0507 at 497.307 kb on + strand, within Atu0507 at 497.336 kb on - strand, within Atu0507 at 497.398 kb on + strand, within Atu0507 at 497.419 kb on + strand, within Atu0507 at 497.429 kb on + strand, within Atu0507 at 497.521 kb on + strand, within Atu0508 at 497.521 kb on + strand, within Atu0508 at 497.596 kb on + strand, within Atu0508 at 497.604 kb on - strand, within Atu0508 at 497.629 kb on + strand, within Atu0508 at 497.836 kb on + strand, within Atu0509 at 498.252 kb on - strand at 498.495 kb on - strand, within Atu0510 at 498.553 kb on - strand, within Atu0510 at 498.580 kb on + strand, within Atu0510 at 498.745 kb on + strand, within Atu0510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 496,504 + -0.7 496,512 - +0.3 496,612 - Atu0506 0.11 +0.5 496,658 - Atu0506 0.19 -0.0 496,663 - Atu0506 0.20 -0.0 496,665 + Atu0506 0.20 +0.1 496,665 + Atu0506 0.20 +0.1 496,673 - Atu0506 0.22 +0.3 496,705 + Atu0506 0.27 -2.1 496,799 - Atu0506 0.43 +0.2 496,809 + Atu0506 0.45 +0.1 496,890 - Atu0506 0.59 +0.7 496,989 + Atu0506 0.76 +0.4 496,994 + Atu0506 0.76 +0.2 497,062 + Atu0506 0.88 -1.0 497,063 + Atu0506 0.88 +0.2 497,087 + +1.1 497,109 + +0.2 497,131 + -1.9 497,192 + Atu0507 0.14 -0.1 497,210 + Atu0507 0.20 -0.3 497,210 + Atu0507 0.20 +0.2 497,307 + Atu0507 0.48 -4.6 497,336 - Atu0507 0.56 -0.8 497,398 + Atu0507 0.74 -1.8 497,419 + Atu0507 0.80 -1.4 497,429 + Atu0507 0.83 -1.4 497,521 + Atu0508 0.13 -1.0 497,521 + Atu0508 0.13 +0.0 497,596 + Atu0508 0.40 -3.0 497,604 - Atu0508 0.43 +0.1 497,629 + Atu0508 0.52 -1.5 497,836 + Atu0509 0.15 -0.7 498,252 - -0.8 498,495 - Atu0510 0.15 -0.8 498,553 - Atu0510 0.19 -2.5 498,580 + Atu0510 0.20 -2.0 498,745 + Atu0510 0.30 -0.5
Or see this region's nucleotide sequence