Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0484 and Atu0485 are separated by 252 nucleotides Atu0485 and Atu0486 overlap by 1 nucleotides
Atu0484: Atu0484 - two component response regulator, at 473,010 to 473,660
Atu0484
Atu0485: Atu0485 - hypothetical protein, at 473,913 to 474,266
Atu0485
Atu0486: Atu0486 - dihydroorotate dehydrogenase, at 474,266 to 475,357
Atu0486
Position (kb) 473
474
475 Strain fitness (log2 ratio) -1
0
1 at 473.062 kb on - strand at 473.074 kb on + strand at 473.075 kb on + strand, within Atu0484 at 473.080 kb on + strand, within Atu0484 at 473.128 kb on + strand, within Atu0484 at 473.237 kb on + strand, within Atu0484 at 473.237 kb on + strand, within Atu0484 at 473.237 kb on + strand, within Atu0484 at 473.252 kb on + strand, within Atu0484 at 473.292 kb on + strand, within Atu0484 at 473.292 kb on + strand, within Atu0484 at 473.313 kb on + strand, within Atu0484 at 473.379 kb on + strand, within Atu0484 at 473.399 kb on - strand, within Atu0484 at 473.568 kb on + strand, within Atu0484 at 473.598 kb on - strand at 473.783 kb on + strand at 473.898 kb on + strand at 473.898 kb on + strand at 473.906 kb on - strand at 473.969 kb on + strand, within Atu0485 at 473.977 kb on - strand, within Atu0485 at 474.181 kb on + strand, within Atu0485 at 474.203 kb on + strand, within Atu0485 at 474.300 kb on + strand at 474.482 kb on - strand, within Atu0486 at 474.574 kb on + strand, within Atu0486 at 474.632 kb on + strand, within Atu0486 at 474.725 kb on + strand, within Atu0486 at 474.846 kb on - strand, within Atu0486 at 474.904 kb on + strand, within Atu0486 at 474.904 kb on + strand, within Atu0486 at 474.944 kb on - strand, within Atu0486
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 473,062 - +0.1 473,074 + +0.4 473,075 + Atu0484 0.10 +0.1 473,080 + Atu0484 0.11 +0.7 473,128 + Atu0484 0.18 +0.2 473,237 + Atu0484 0.35 +0.4 473,237 + Atu0484 0.35 +0.1 473,237 + Atu0484 0.35 -0.8 473,252 + Atu0484 0.37 -0.2 473,292 + Atu0484 0.43 +0.6 473,292 + Atu0484 0.43 -0.0 473,313 + Atu0484 0.47 -0.4 473,379 + Atu0484 0.57 +0.2 473,399 - Atu0484 0.60 +0.5 473,568 + Atu0484 0.86 -0.1 473,598 - -1.0 473,783 + +0.5 473,898 + -0.7 473,898 + -1.1 473,906 - +1.6 473,969 + Atu0485 0.16 -0.1 473,977 - Atu0485 0.18 +0.4 474,181 + Atu0485 0.76 +0.4 474,203 + Atu0485 0.82 +0.5 474,300 + -0.3 474,482 - Atu0486 0.20 +0.0 474,574 + Atu0486 0.28 -0.6 474,632 + Atu0486 0.34 -0.5 474,725 + Atu0486 0.42 -0.9 474,846 - Atu0486 0.53 -0.2 474,904 + Atu0486 0.58 -1.0 474,904 + Atu0486 0.58 -0.3 474,944 - Atu0486 0.62 +0.6
Or see this region's nucleotide sequence