Strain Fitness in Agrobacterium fabrum C58 around Atu0421

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0420 and Atu0421 are separated by 288 nucleotidesAtu0421 and Atu0422 overlap by 4 nucleotides Atu0420: Atu0420 - ABC transporter, substrate binding protein (phosphate), at 416,278 to 417,312 Atu0420 Atu0421: Atu0421 - ABC transporter, membrane spanning protein, at 417,601 to 419,085 Atu0421 Atu0422: Atu0422 - ABC transporter, membrane spanning protein, at 419,082 to 420,404 Atu0422 Position (kb) 417 418 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1at 417.469 kb on + strandat 417.489 kb on + strandat 417.497 kb on - strandat 417.522 kb on + strandat 417.545 kb on + strandat 418.260 kb on + strand, within Atu0421at 420.029 kb on + strand, within Atu0422

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
417,469 + -3.4
417,489 + -0.5
417,497 - -1.1
417,522 + -1.5
417,545 + -2.8
418,260 + Atu0421 0.44 -3.5
420,029 + Atu0422 0.72 -3.1

Or see this region's nucleotide sequence