Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0338 and Atu0339 are separated by 51 nucleotides Atu0339 and Atu0340 are separated by 297 nucleotides Atu0340 and Atu0341 overlap by 4 nucleotides Atu0341 and Atu0342 overlap by 1 nucleotides
Atu0338: Atu0338 - integration host factor, beta subunit, at 330,144 to 330,446
Atu0338
Atu0339: Atu0339 - hypothetical protein, at 330,498 to 330,854
Atu0339
Atu0340: Atu0340 - SAM dependent methyltransferase, at 331,152 to 332,081
Atu0340
Atu0341: Atu0341 - rRNA methylase, at 332,078 to 332,938
Atu0341
Atu0342: Atu0342 - lipoprotein signal peptidase, at 332,938 to 333,426
Atu0342
Position (kb) 331
332
333 Strain fitness (log2 ratio) -1
0
1 at 330.428 kb on - strand at 330.475 kb on - strand at 330.635 kb on - strand, within Atu0339 at 330.649 kb on - strand, within Atu0339 at 330.701 kb on - strand, within Atu0339 at 330.728 kb on + strand, within Atu0339 at 330.736 kb on - strand, within Atu0339 at 330.839 kb on + strand at 330.884 kb on - strand at 331.895 kb on + strand, within Atu0340 at 331.924 kb on + strand, within Atu0340 at 332.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 330,428 - -1.2 330,475 - -0.1 330,635 - Atu0339 0.38 +1.0 330,649 - Atu0339 0.42 +0.6 330,701 - Atu0339 0.57 -0.3 330,728 + Atu0339 0.64 -0.5 330,736 - Atu0339 0.67 +0.3 330,839 + -1.4 330,884 - +0.2 331,895 + Atu0340 0.80 +0.0 331,924 + Atu0340 0.83 -0.7 332,893 + +0.3
Or see this region's nucleotide sequence