Strain Fitness in Agrobacterium fabrum C58 around Atu0214

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0213 and Atu0214 are separated by 58 nucleotidesAtu0214 and Atu0215 are separated by 142 nucleotides Atu0213: Atu0213 - nicotinate phosphoribosyltransferase, at 217,114 to 218,418 Atu0213 Atu0214: Atu0214 - leucine aminopeptidase, at 218,477 to 219,871 Atu0214 Atu0215: Atu0215 - hypothetical protein, at 220,014 to 220,838 Atu0215 Position (kb) 218 219 220Strain fitness (log2 ratio) -2 -1 0 1 2 3at 217.608 kb on + strand, within Atu0213at 217.641 kb on - strand, within Atu0213at 217.641 kb on - strand, within Atu0213at 217.768 kb on + strand, within Atu0213at 217.776 kb on - strand, within Atu0213at 217.789 kb on + strand, within Atu0213at 217.834 kb on - strand, within Atu0213at 217.941 kb on + strand, within Atu0213at 218.034 kb on - strand, within Atu0213at 218.078 kb on + strand, within Atu0213at 218.128 kb on - strand, within Atu0213at 218.129 kb on + strand, within Atu0213at 218.145 kb on - strand, within Atu0213at 218.164 kb on - strand, within Atu0213at 218.201 kb on + strand, within Atu0213at 218.214 kb on - strand, within Atu0213at 218.236 kb on + strand, within Atu0213at 218.313 kb on - strandat 218.321 kb on - strandat 218.415 kb on - strandat 218.415 kb on - strandat 218.468 kb on - strandat 218.582 kb on + strandat 218.629 kb on - strand, within Atu0214at 218.640 kb on - strand, within Atu0214at 218.801 kb on + strand, within Atu0214at 218.807 kb on - strand, within Atu0214at 218.807 kb on - strand, within Atu0214at 218.823 kb on - strand, within Atu0214at 218.844 kb on + strand, within Atu0214at 218.872 kb on + strand, within Atu0214at 218.872 kb on + strand, within Atu0214at 218.872 kb on + strand, within Atu0214at 218.892 kb on + strand, within Atu0214at 218.892 kb on + strand, within Atu0214at 218.892 kb on + strand, within Atu0214at 218.970 kb on - strand, within Atu0214at 219.083 kb on + strand, within Atu0214at 219.084 kb on - strand, within Atu0214at 219.126 kb on + strand, within Atu0214at 219.148 kb on + strand, within Atu0214at 219.177 kb on + strand, within Atu0214at 219.253 kb on - strand, within Atu0214at 219.258 kb on - strand, within Atu0214at 219.322 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.327 kb on + strand, within Atu0214at 219.335 kb on - strand, within Atu0214at 219.396 kb on + strand, within Atu0214at 219.469 kb on - strand, within Atu0214at 219.499 kb on - strand, within Atu0214at 219.599 kb on - strand, within Atu0214at 219.623 kb on + strand, within Atu0214at 219.659 kb on + strand, within Atu0214at 219.672 kb on - strand, within Atu0214at 219.744 kb on - strandat 219.754 kb on - strandat 219.754 kb on - strandat 219.754 kb on - strandat 219.773 kb on - strandat 219.914 kb on + strandat 219.974 kb on - strandat 220.058 kb on - strandat 220.063 kb on + strandat 220.208 kb on - strand, within Atu0215at 220.226 kb on + strand, within Atu0215at 220.233 kb on + strand, within Atu0215at 220.451 kb on + strand, within Atu0215at 220.459 kb on - strand, within Atu0215at 220.483 kb on + strand, within Atu0215at 220.483 kb on + strand, within Atu0215at 220.492 kb on + strand, within Atu0215at 220.567 kb on - strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.574 kb on + strand, within Atu0215at 220.576 kb on + strand, within Atu0215at 220.576 kb on + strand, within Atu0215at 220.582 kb on - strand, within Atu0215at 220.605 kb on + strand, within Atu0215at 220.605 kb on + strand, within Atu0215at 220.630 kb on + strand, within Atu0215at 220.684 kb on + strand, within Atu0215at 220.694 kb on - strand, within Atu0215at 220.694 kb on - strand, within Atu0215at 220.759 kb on - strandat 220.785 kb on + strandat 220.787 kb on + strandat 220.816 kb on - strandat 220.834 kb on + strandat 220.834 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
217,608 + Atu0213 0.38 -0.5
217,641 - Atu0213 0.40 +0.9
217,641 - Atu0213 0.40 -2.4
217,768 + Atu0213 0.50 -0.6
217,776 - Atu0213 0.51 +0.3
217,789 + Atu0213 0.52 -2.1
217,834 - Atu0213 0.55 +0.1
217,941 + Atu0213 0.63 +1.1
218,034 - Atu0213 0.70 -1.4
218,078 + Atu0213 0.74 -1.6
218,128 - Atu0213 0.78 +0.0
218,129 + Atu0213 0.78 +0.0
218,145 - Atu0213 0.79 +0.5
218,164 - Atu0213 0.80 +0.0
218,201 + Atu0213 0.83 -0.4
218,214 - Atu0213 0.84 -0.9
218,236 + Atu0213 0.86 +0.3
218,313 - -0.1
218,321 - -0.6
218,415 - +0.4
218,415 - +0.8
218,468 - -0.2
218,582 + +0.9
218,629 - Atu0214 0.11 +2.9
218,640 - Atu0214 0.12 +0.1
218,801 + Atu0214 0.23 -0.6
218,807 - Atu0214 0.24 +0.4
218,807 - Atu0214 0.24 +0.1
218,823 - Atu0214 0.25 +0.4
218,844 + Atu0214 0.26 +1.7
218,872 + Atu0214 0.28 +0.8
218,872 + Atu0214 0.28 +1.0
218,872 + Atu0214 0.28 +0.1
218,892 + Atu0214 0.30 -0.1
218,892 + Atu0214 0.30 +0.1
218,892 + Atu0214 0.30 -1.0
218,970 - Atu0214 0.35 +0.7
219,083 + Atu0214 0.43 -0.1
219,084 - Atu0214 0.44 +0.2
219,126 + Atu0214 0.47 -0.0
219,148 + Atu0214 0.48 +0.3
219,177 + Atu0214 0.50 +0.9
219,253 - Atu0214 0.56 -0.2
219,258 - Atu0214 0.56 -0.2
219,322 + Atu0214 0.61 +0.4
219,327 + Atu0214 0.61 +0.7
219,327 + Atu0214 0.61 +0.6
219,327 + Atu0214 0.61 +0.6
219,335 - Atu0214 0.62 +2.2
219,396 + Atu0214 0.66 -0.2
219,469 - Atu0214 0.71 +1.0
219,499 - Atu0214 0.73 +0.7
219,599 - Atu0214 0.80 +0.5
219,623 + Atu0214 0.82 +1.4
219,659 + Atu0214 0.85 +1.7
219,672 - Atu0214 0.86 -0.2
219,744 - -1.2
219,754 - +0.2
219,754 - +0.4
219,754 - -1.0
219,773 - +1.0
219,914 + +0.6
219,974 - +0.1
220,058 - -0.1
220,063 + +0.6
220,208 - Atu0215 0.24 +0.1
220,226 + Atu0215 0.26 +3.2
220,233 + Atu0215 0.27 -0.7
220,451 + Atu0215 0.53 +0.5
220,459 - Atu0215 0.54 +0.4
220,483 + Atu0215 0.57 -0.8
220,483 + Atu0215 0.57 +0.7
220,492 + Atu0215 0.58 +0.0
220,567 - Atu0215 0.67 +0.7
220,574 + Atu0215 0.68 -0.1
220,574 + Atu0215 0.68 +0.3
220,574 + Atu0215 0.68 -0.8
220,576 + Atu0215 0.68 -0.3
220,576 + Atu0215 0.68 +0.3
220,582 - Atu0215 0.69 -0.0
220,605 + Atu0215 0.72 -0.3
220,605 + Atu0215 0.72 +0.4
220,630 + Atu0215 0.75 +0.2
220,684 + Atu0215 0.81 +0.2
220,694 - Atu0215 0.82 +0.5
220,694 - Atu0215 0.82 -0.2
220,759 - +0.3
220,785 + +1.0
220,787 + -0.2
220,816 - -0.8
220,834 + +0.2
220,834 + -0.1

Or see this region's nucleotide sequence