Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0179 and Atu0180 are separated by 1 nucleotides Atu0180 and Atu0181 overlap by 4 nucleotides Atu0181 and Atu0182 are separated by 82 nucleotides
Atu0179: Atu0179 - hypothetical protein, at 182,758 to 183,867
Atu0179
Atu0180: Atu0180 - hypothetical protein, at 183,869 to 184,480
Atu0180
Atu0181: Atu0181 - hypothetical protein, at 184,477 to 184,938
Atu0181
Atu0182: Atu0182 - transcriptional regulator, GntR family, at 185,021 to 185,758
Atu0182
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.948 kb on - strand, within Atu0179 at 182.953 kb on - strand, within Atu0179 at 183.076 kb on - strand, within Atu0179 at 183.088 kb on - strand, within Atu0179 at 183.088 kb on - strand, within Atu0179 at 183.236 kb on - strand, within Atu0179 at 183.446 kb on + strand, within Atu0179 at 183.446 kb on - strand, within Atu0179 at 183.469 kb on - strand, within Atu0179 at 183.479 kb on - strand, within Atu0179 at 183.545 kb on - strand, within Atu0179 at 183.546 kb on - strand, within Atu0179 at 183.566 kb on + strand, within Atu0179 at 183.573 kb on + strand, within Atu0179 at 183.573 kb on + strand, within Atu0179 at 183.623 kb on - strand, within Atu0179 at 183.644 kb on - strand, within Atu0179 at 183.782 kb on + strand at 183.824 kb on + strand at 183.848 kb on + strand at 183.855 kb on - strand at 183.868 kb on - strand at 183.882 kb on + strand at 183.883 kb on - strand at 183.883 kb on - strand at 183.942 kb on - strand, within Atu0180 at 183.948 kb on - strand, within Atu0180 at 183.968 kb on + strand, within Atu0180 at 183.970 kb on + strand, within Atu0180 at 183.983 kb on - strand, within Atu0180 at 183.983 kb on - strand, within Atu0180 at 184.121 kb on - strand, within Atu0180 at 184.158 kb on + strand, within Atu0180 at 184.238 kb on + strand, within Atu0180 at 184.251 kb on + strand, within Atu0180 at 184.259 kb on - strand, within Atu0180 at 184.339 kb on + strand, within Atu0180 at 184.366 kb on + strand, within Atu0180 at 184.400 kb on - strand, within Atu0180 at 184.475 kb on + strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.487 kb on + strand at 184.582 kb on - strand, within Atu0181 at 184.618 kb on - strand, within Atu0181 at 184.694 kb on - strand, within Atu0181 at 184.782 kb on - strand, within Atu0181 at 184.843 kb on + strand, within Atu0181 at 185.086 kb on + strand at 185.086 kb on + strand at 185.220 kb on + strand, within Atu0182 at 185.264 kb on - strand, within Atu0182 at 185.323 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.479 kb on + strand, within Atu0182
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 182,948 - Atu0179 0.17 +0.5 182,953 - Atu0179 0.18 +0.6 183,076 - Atu0179 0.29 -0.7 183,088 - Atu0179 0.30 -0.0 183,088 - Atu0179 0.30 +0.6 183,236 - Atu0179 0.43 +0.1 183,446 + Atu0179 0.62 +1.4 183,446 - Atu0179 0.62 +2.1 183,469 - Atu0179 0.64 -0.2 183,479 - Atu0179 0.65 -0.7 183,545 - Atu0179 0.71 +1.0 183,546 - Atu0179 0.71 -0.4 183,566 + Atu0179 0.73 -2.6 183,573 + Atu0179 0.73 -0.2 183,573 + Atu0179 0.73 +1.7 183,623 - Atu0179 0.78 +0.3 183,644 - Atu0179 0.80 -0.2 183,782 + +0.3 183,824 + -0.3 183,848 + -0.2 183,855 - -0.3 183,868 - +0.0 183,882 + -0.5 183,883 - -1.3 183,883 - +0.6 183,942 - Atu0180 0.12 +0.8 183,948 - Atu0180 0.13 +0.3 183,968 + Atu0180 0.16 -0.6 183,970 + Atu0180 0.17 -0.3 183,983 - Atu0180 0.19 +0.1 183,983 - Atu0180 0.19 +0.1 184,121 - Atu0180 0.41 +0.5 184,158 + Atu0180 0.47 +0.4 184,238 + Atu0180 0.60 +0.4 184,251 + Atu0180 0.62 +0.5 184,259 - Atu0180 0.64 +1.1 184,339 + Atu0180 0.77 -0.0 184,366 + Atu0180 0.81 +0.2 184,400 - Atu0180 0.87 +0.7 184,475 + +0.3 184,483 - +0.5 184,483 - -0.5 184,483 - -1.2 184,487 + +0.9 184,582 - Atu0181 0.23 +0.3 184,618 - Atu0181 0.31 +1.8 184,694 - Atu0181 0.47 -0.3 184,782 - Atu0181 0.66 -0.4 184,843 + Atu0181 0.79 -0.1 185,086 + +0.4 185,086 + -0.3 185,220 + Atu0182 0.27 +0.2 185,264 - Atu0182 0.33 -0.4 185,323 + Atu0182 0.41 +1.4 185,449 + Atu0182 0.58 +0.4 185,449 + Atu0182 0.58 -0.4 185,479 + Atu0182 0.62 -0.3
Or see this region's nucleotide sequence