Strain Fitness in Agrobacterium fabrum C58 around Atu0177

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0175 and Atu0176 overlap by 4 nucleotidesAtu0176 and Atu0177 are separated by 67 nucleotidesAtu0177 and Atu0178 overlap by 4 nucleotides Atu0175: Atu0175 - acetyltransferase, at 179,560 to 180,177 Atu0175 Atu0176: Atu0176 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 180,174 to 180,881 Atu0176 Atu0177: Atu0177 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 180,949 to 181,725 Atu0177 Atu0178: Atu0178 - hypothetical protein, at 181,722 to 182,624 Atu0178 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1at 179.979 kb on + strand, within Atu0175at 180.045 kb on - strand, within Atu0175at 180.052 kb on - strand, within Atu0175at 180.072 kb on + strand, within Atu0175at 180.165 kb on + strandat 180.225 kb on + strandat 180.267 kb on - strand, within Atu0176at 180.301 kb on + strand, within Atu0176at 180.305 kb on - strand, within Atu0176at 180.569 kb on - strand, within Atu0176at 180.663 kb on - strand, within Atu0176at 180.663 kb on - strand, within Atu0176at 180.699 kb on + strand, within Atu0176at 180.706 kb on + strand, within Atu0176at 180.741 kb on + strand, within Atu0176at 181.031 kb on - strand, within Atu0177at 181.078 kb on - strand, within Atu0177at 181.078 kb on - strand, within Atu0177at 181.127 kb on + strand, within Atu0177at 181.146 kb on + strand, within Atu0177at 181.156 kb on - strand, within Atu0177at 181.158 kb on + strand, within Atu0177at 181.373 kb on + strand, within Atu0177at 181.420 kb on - strand, within Atu0177at 181.533 kb on + strand, within Atu0177at 181.553 kb on + strand, within Atu0177at 181.635 kb on + strand, within Atu0177at 181.643 kb on - strand, within Atu0177at 181.754 kb on - strandat 181.835 kb on - strand, within Atu0178at 181.836 kb on + strand, within Atu0178at 181.887 kb on - strand, within Atu0178at 181.901 kb on + strand, within Atu0178at 181.945 kb on + strand, within Atu0178at 181.953 kb on - strand, within Atu0178at 181.958 kb on - strand, within Atu0178at 181.958 kb on - strand, within Atu0178at 181.968 kb on - strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 182.002 kb on - strand, within Atu0178at 182.002 kb on - strand, within Atu0178at 182.036 kb on - strand, within Atu0178at 182.072 kb on - strand, within Atu0178at 182.088 kb on + strand, within Atu0178at 182.088 kb on + strand, within Atu0178at 182.150 kb on + strand, within Atu0178at 182.150 kb on + strand, within Atu0178at 182.159 kb on + strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.208 kb on + strand, within Atu0178at 182.238 kb on + strand, within Atu0178at 182.247 kb on - strand, within Atu0178at 182.317 kb on - strand, within Atu0178at 182.332 kb on - strand, within Atu0178at 182.469 kb on + strand, within Atu0178at 182.498 kb on - strand, within Atu0178at 182.580 kb on + strandat 182.628 kb on + strandat 182.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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179,979 + Atu0175 0.68 +0.0
180,045 - Atu0175 0.78 -0.9
180,052 - Atu0175 0.80 +0.2
180,072 + Atu0175 0.83 +0.4
180,165 + -0.6
180,225 + +0.2
180,267 - Atu0176 0.13 +0.7
180,301 + Atu0176 0.18 -0.2
180,305 - Atu0176 0.19 -0.2
180,569 - Atu0176 0.56 +0.1
180,663 - Atu0176 0.69 -0.1
180,663 - Atu0176 0.69 +0.3
180,699 + Atu0176 0.74 -0.6
180,706 + Atu0176 0.75 -0.3
180,741 + Atu0176 0.80 -0.0
181,031 - Atu0177 0.11 +1.0
181,078 - Atu0177 0.17 +0.3
181,078 - Atu0177 0.17 +0.4
181,127 + Atu0177 0.23 +0.3
181,146 + Atu0177 0.25 +0.3
181,156 - Atu0177 0.27 +0.4
181,158 + Atu0177 0.27 +0.3
181,373 + Atu0177 0.55 -0.2
181,420 - Atu0177 0.61 +0.5
181,533 + Atu0177 0.75 +0.7
181,553 + Atu0177 0.78 -0.5
181,635 + Atu0177 0.88 -0.3
181,643 - Atu0177 0.89 +0.7
181,754 - +0.3
181,835 - Atu0178 0.13 -0.2
181,836 + Atu0178 0.13 -0.6
181,887 - Atu0178 0.18 +0.6
181,901 + Atu0178 0.20 -0.6
181,945 + Atu0178 0.25 -0.8
181,953 - Atu0178 0.26 -0.3
181,958 - Atu0178 0.26 -0.6
181,958 - Atu0178 0.26 -0.5
181,968 - Atu0178 0.27 +0.4
181,994 + Atu0178 0.30 -1.0
181,994 + Atu0178 0.30 -0.3
181,994 + Atu0178 0.30 -0.1
181,994 + Atu0178 0.30 -0.0
182,002 - Atu0178 0.31 +0.1
182,002 - Atu0178 0.31 -0.2
182,036 - Atu0178 0.35 +0.1
182,072 - Atu0178 0.39 -0.2
182,088 + Atu0178 0.41 +0.4
182,088 + Atu0178 0.41 +0.5
182,150 + Atu0178 0.47 -1.1
182,150 + Atu0178 0.47 +0.6
182,159 + Atu0178 0.48 -0.1
182,167 - Atu0178 0.49 -0.0
182,167 - Atu0178 0.49 -0.4
182,167 - Atu0178 0.49 +0.1
182,208 + Atu0178 0.54 -0.6
182,238 + Atu0178 0.57 -0.5
182,247 - Atu0178 0.58 +0.6
182,317 - Atu0178 0.66 -2.5
182,332 - Atu0178 0.68 +0.2
182,469 + Atu0178 0.83 -0.8
182,498 - Atu0178 0.86 +0.1
182,580 + +0.1
182,628 + +0.8
182,649 - -1.1

Or see this region's nucleotide sequence