Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14230

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14225 and ABID97_RS14230 are separated by 15 nucleotidesABID97_RS14230 and ABID97_RS14235 are separated by 6 nucleotidesABID97_RS14235 and ABID97_RS14240 are separated by 7 nucleotides ABID97_RS14225: ABID97_RS14225 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 2,958,906 to 2,960,183 _RS14225 ABID97_RS14230: ABID97_RS14230 - histidine--tRNA ligase, at 2,960,199 to 2,961,509 _RS14230 ABID97_RS14235: ABID97_RS14235 - tetratricopeptide repeat protein, at 2,961,516 to 2,962,208 _RS14235 ABID97_RS14240: ABID97_RS14240 - outer membrane protein assembly factor BamB, at 2,962,216 to 2,963,358 _RS14240 Position (kb) 2960 2961 2962Strain fitness (log2 ratio) -1 0 1at 2961.484 kb on + strandat 2961.484 kb on + strandat 2962.029 kb on + strand, within ABID97_RS14235at 2962.029 kb on + strand, within ABID97_RS14235at 2962.215 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,961,484 + -0.2
2,961,484 + -0.0
2,962,029 + ABID97_RS14235 0.74 +0.8
2,962,029 + ABID97_RS14235 0.74 +1.0
2,962,215 + -0.1

Or see this region's nucleotide sequence