Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11575

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11570 and ABID97_RS11575 are separated by 255 nucleotidesABID97_RS11575 and ABID97_RS11580 are separated by 70 nucleotidesABID97_RS11580 and ABID97_RS11585 are separated by 82 nucleotides ABID97_RS11570: ABID97_RS11570 - carbon-nitrogen hydrolase family protein, at 2,390,037 to 2,391,050 _RS11570 ABID97_RS11575: ABID97_RS11575 - phosphotransferase, at 2,391,306 to 2,392,385 _RS11575 ABID97_RS11580: ABID97_RS11580 - SDR family oxidoreductase, at 2,392,456 to 2,393,157 _RS11580 ABID97_RS11585: ABID97_RS11585 - glucose 1-dehydrogenase, at 2,393,240 to 2,393,989 _RS11585 Position (kb) 2391 2392 2393Strain fitness (log2 ratio) -1 0 1at 2390.322 kb on + strand, within ABID97_RS11570at 2390.374 kb on - strand, within ABID97_RS11570at 2390.559 kb on + strand, within ABID97_RS11570at 2390.568 kb on + strand, within ABID97_RS11570at 2390.569 kb on - strand, within ABID97_RS11570at 2390.676 kb on + strand, within ABID97_RS11570at 2390.677 kb on - strand, within ABID97_RS11570at 2390.698 kb on - strand, within ABID97_RS11570at 2390.698 kb on - strand, within ABID97_RS11570at 2390.698 kb on - strand, within ABID97_RS11570at 2390.806 kb on - strand, within ABID97_RS11570at 2390.806 kb on - strand, within ABID97_RS11570at 2390.865 kb on + strand, within ABID97_RS11570at 2390.865 kb on + strand, within ABID97_RS11570at 2390.910 kb on + strand, within ABID97_RS11570at 2391.004 kb on - strandat 2391.088 kb on + strandat 2391.127 kb on + strandat 2391.529 kb on + strand, within ABID97_RS11575at 2391.529 kb on + strand, within ABID97_RS11575at 2391.529 kb on + strand, within ABID97_RS11575at 2391.530 kb on - strand, within ABID97_RS11575at 2391.530 kb on - strand, within ABID97_RS11575at 2391.774 kb on + strand, within ABID97_RS11575at 2391.877 kb on + strand, within ABID97_RS11575at 2391.878 kb on - strand, within ABID97_RS11575at 2391.895 kb on + strand, within ABID97_RS11575at 2391.895 kb on + strand, within ABID97_RS11575at 2391.895 kb on + strand, within ABID97_RS11575at 2392.087 kb on + strand, within ABID97_RS11575at 2392.234 kb on + strand, within ABID97_RS11575at 2392.235 kb on - strand, within ABID97_RS11575at 2392.417 kb on + strandat 2392.418 kb on - strandat 2392.418 kb on - strandat 2392.472 kb on + strandat 2392.730 kb on + strand, within ABID97_RS11580at 2392.731 kb on - strand, within ABID97_RS11580at 2392.731 kb on - strand, within ABID97_RS11580at 2392.900 kb on + strand, within ABID97_RS11580at 2393.057 kb on + strand, within ABID97_RS11580at 2393.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,390,322 + ABID97_RS11570 0.28 +0.1
2,390,374 - ABID97_RS11570 0.33 -0.2
2,390,559 + ABID97_RS11570 0.51 +1.7
2,390,568 + ABID97_RS11570 0.52 -0.0
2,390,569 - ABID97_RS11570 0.52 +0.2
2,390,676 + ABID97_RS11570 0.63 +0.3
2,390,677 - ABID97_RS11570 0.63 -0.2
2,390,698 - ABID97_RS11570 0.65 -1.7
2,390,698 - ABID97_RS11570 0.65 +0.2
2,390,698 - ABID97_RS11570 0.65 -0.4
2,390,806 - ABID97_RS11570 0.76 +0.1
2,390,806 - ABID97_RS11570 0.76 -0.1
2,390,865 + ABID97_RS11570 0.82 +1.0
2,390,865 + ABID97_RS11570 0.82 -0.4
2,390,910 + ABID97_RS11570 0.86 +0.8
2,391,004 - +0.2
2,391,088 + -0.4
2,391,127 + +0.4
2,391,529 + ABID97_RS11575 0.21 +0.2
2,391,529 + ABID97_RS11575 0.21 +0.1
2,391,529 + ABID97_RS11575 0.21 -0.3
2,391,530 - ABID97_RS11575 0.21 -0.6
2,391,530 - ABID97_RS11575 0.21 +0.5
2,391,774 + ABID97_RS11575 0.43 +0.4
2,391,877 + ABID97_RS11575 0.53 -0.3
2,391,878 - ABID97_RS11575 0.53 -0.3
2,391,895 + ABID97_RS11575 0.55 -0.3
2,391,895 + ABID97_RS11575 0.55 +0.7
2,391,895 + ABID97_RS11575 0.55 +0.9
2,392,087 + ABID97_RS11575 0.72 +1.4
2,392,234 + ABID97_RS11575 0.86 +0.0
2,392,235 - ABID97_RS11575 0.86 +0.2
2,392,417 + -0.6
2,392,418 - -0.2
2,392,418 - +0.1
2,392,472 + +0.0
2,392,730 + ABID97_RS11580 0.39 +0.6
2,392,731 - ABID97_RS11580 0.39 -0.4
2,392,731 - ABID97_RS11580 0.39 +0.2
2,392,900 + ABID97_RS11580 0.63 +0.6
2,393,057 + ABID97_RS11580 0.86 +1.1
2,393,217 + +0.1

Or see this region's nucleotide sequence