Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10600

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10595 and ABID97_RS10600 are separated by 11 nucleotidesABID97_RS10600 and ABID97_RS10605 are separated by 32 nucleotides ABID97_RS10595: ABID97_RS10595 - sodium:proton antiporter, at 2,202,803 to 2,204,215 _RS10595 ABID97_RS10600: ABID97_RS10600 - D-glycerate dehydrogenase, at 2,204,227 to 2,205,213 _RS10600 ABID97_RS10605: ABID97_RS10605 - DNA recombination protein RmuC, at 2,205,246 to 2,206,625 _RS10605 Position (kb) 2204 2205 2206Strain fitness (log2 ratio) -2 -1 0 1at 2203.469 kb on + strand, within ABID97_RS10595at 2203.469 kb on + strand, within ABID97_RS10595at 2203.469 kb on + strand, within ABID97_RS10595at 2203.469 kb on + strand, within ABID97_RS10595at 2203.469 kb on + strand, within ABID97_RS10595at 2203.469 kb on + strand, within ABID97_RS10595at 2203.470 kb on - strand, within ABID97_RS10595at 2203.491 kb on - strand, within ABID97_RS10595at 2203.907 kb on + strand, within ABID97_RS10595at 2203.907 kb on + strand, within ABID97_RS10595at 2203.907 kb on + strand, within ABID97_RS10595at 2203.907 kb on + strand, within ABID97_RS10595at 2203.907 kb on + strand, within ABID97_RS10595at 2203.907 kb on + strand, within ABID97_RS10595at 2203.908 kb on - strand, within ABID97_RS10595at 2203.908 kb on - strand, within ABID97_RS10595at 2203.908 kb on - strand, within ABID97_RS10595at 2203.959 kb on - strand, within ABID97_RS10595at 2204.012 kb on + strand, within ABID97_RS10595at 2204.012 kb on + strand, within ABID97_RS10595at 2204.013 kb on - strand, within ABID97_RS10595at 2204.069 kb on + strand, within ABID97_RS10595at 2204.069 kb on + strand, within ABID97_RS10595at 2204.070 kb on - strand, within ABID97_RS10595at 2204.462 kb on - strand, within ABID97_RS10600at 2204.462 kb on - strand, within ABID97_RS10600at 2204.462 kb on - strand, within ABID97_RS10600at 2204.635 kb on + strand, within ABID97_RS10600at 2204.636 kb on - strand, within ABID97_RS10600at 2204.636 kb on - strand, within ABID97_RS10600at 2204.752 kb on + strand, within ABID97_RS10600at 2204.753 kb on - strand, within ABID97_RS10600at 2204.753 kb on - strand, within ABID97_RS10600at 2204.806 kb on + strand, within ABID97_RS10600at 2205.211 kb on + strandat 2205.942 kb on + strand, within ABID97_RS10605at 2205.942 kb on + strand, within ABID97_RS10605at 2206.072 kb on - strand, within ABID97_RS10605

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,203,469 + ABID97_RS10595 0.47 -0.1
2,203,469 + ABID97_RS10595 0.47 -0.0
2,203,469 + ABID97_RS10595 0.47 +0.5
2,203,469 + ABID97_RS10595 0.47 +0.2
2,203,469 + ABID97_RS10595 0.47 +0.4
2,203,469 + ABID97_RS10595 0.47 +0.1
2,203,470 - ABID97_RS10595 0.47 -0.5
2,203,491 - ABID97_RS10595 0.49 +0.0
2,203,907 + ABID97_RS10595 0.78 -0.2
2,203,907 + ABID97_RS10595 0.78 -0.1
2,203,907 + ABID97_RS10595 0.78 +0.2
2,203,907 + ABID97_RS10595 0.78 -0.2
2,203,907 + ABID97_RS10595 0.78 +0.2
2,203,907 + ABID97_RS10595 0.78 -1.1
2,203,908 - ABID97_RS10595 0.78 +0.9
2,203,908 - ABID97_RS10595 0.78 -0.3
2,203,908 - ABID97_RS10595 0.78 +0.3
2,203,959 - ABID97_RS10595 0.82 -0.1
2,204,012 + ABID97_RS10595 0.86 +0.0
2,204,012 + ABID97_RS10595 0.86 -2.3
2,204,013 - ABID97_RS10595 0.86 -0.1
2,204,069 + ABID97_RS10595 0.90 +0.1
2,204,069 + ABID97_RS10595 0.90 +0.7
2,204,070 - ABID97_RS10595 0.90 +0.2
2,204,462 - ABID97_RS10600 0.24 +0.0
2,204,462 - ABID97_RS10600 0.24 +0.7
2,204,462 - ABID97_RS10600 0.24 +0.6
2,204,635 + ABID97_RS10600 0.41 +0.1
2,204,636 - ABID97_RS10600 0.41 -2.0
2,204,636 - ABID97_RS10600 0.41 -1.5
2,204,752 + ABID97_RS10600 0.53 -0.1
2,204,753 - ABID97_RS10600 0.53 -0.4
2,204,753 - ABID97_RS10600 0.53 -0.6
2,204,806 + ABID97_RS10600 0.59 -0.3
2,205,211 + +0.4
2,205,942 + ABID97_RS10605 0.50 -0.4
2,205,942 + ABID97_RS10605 0.50 -0.1
2,206,072 - ABID97_RS10605 0.60 +0.5

Or see this region's nucleotide sequence