Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04590

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04585 and ABID97_RS04590 are separated by 14 nucleotidesABID97_RS04590 and ABID97_RS04595 are separated by 20 nucleotides ABID97_RS04585: ABID97_RS04585 - leucine--tRNA ligase, at 953,423 to 956,053 _RS04585 ABID97_RS04590: ABID97_RS04590 - LPS assembly lipoprotein LptE, at 956,068 to 956,589 _RS04590 ABID97_RS04595: ABID97_RS04595 - DNA polymerase III subunit delta, at 956,610 to 957,683 _RS04595 Position (kb) 956 957Strain fitness (log2 ratio) -1 0 1at 956.061 kb on + strandat 956.062 kb on - strandat 956.062 kb on - strandat 956.062 kb on - strandat 956.062 kb on - strandat 956.588 kb on - strandat 956.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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956,061 + +0.1
956,062 - +0.8
956,062 - -0.2
956,062 - +0.4
956,062 - +1.4
956,588 - +0.5
956,588 - -0.2

Or see this region's nucleotide sequence