Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03360

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03350 and ABID97_RS03355 are separated by 125 nucleotidesABID97_RS03355 and ABID97_RS03360 are separated by 10 nucleotidesABID97_RS03360 and ABID97_RS03365 are separated by 109 nucleotidesABID97_RS03365 and ABID97_RS03370 are separated by 91 nucleotides ABID97_RS03350: ABID97_RS03350 - metallophosphoesterase, at 678,028 to 678,834 _RS03350 ABID97_RS03355: ABID97_RS03355 - hypothetical protein, at 678,960 to 679,133 _RS03355 ABID97_RS03360: ABID97_RS03360 - LysR family transcriptional regulator, at 679,144 to 680,124 _RS03360 ABID97_RS03365: ABID97_RS03365 - hypothetical protein, at 680,234 to 680,782 _RS03365 ABID97_RS03370: ABID97_RS03370 - phosphoenolpyruvate carboxykinase (GTP), at 680,874 to 682,742 _RS03370 Position (kb) 679 680 681Strain fitness (log2 ratio) -2 -1 0 1 2at 678.231 kb on - strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.404 kb on + strand, within ABID97_RS03350at 678.405 kb on - strand, within ABID97_RS03350at 678.405 kb on - strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.620 kb on + strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.621 kb on - strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.641 kb on + strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.642 kb on - strand, within ABID97_RS03350at 678.725 kb on + strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.726 kb on - strand, within ABID97_RS03350at 678.848 kb on + strandat 678.848 kb on + strandat 678.848 kb on + strandat 678.868 kb on + strandat 678.868 kb on + strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.869 kb on - strandat 678.910 kb on + strandat 678.917 kb on - strandat 679.514 kb on + strand, within ABID97_RS03360at 679.515 kb on - strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.574 kb on + strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.575 kb on - strand, within ABID97_RS03360at 679.586 kb on + strand, within ABID97_RS03360at 679.664 kb on + strand, within ABID97_RS03360at 679.746 kb on + strand, within ABID97_RS03360at 679.747 kb on - strand, within ABID97_RS03360at 679.747 kb on - strand, within ABID97_RS03360at 680.155 kb on + strandat 680.183 kb on + strandat 680.184 kb on - strandat 680.184 kb on - strandat 680.186 kb on + strandat 680.186 kb on + strandat 680.186 kb on + strandat 680.187 kb on - strandat 680.253 kb on + strandat 680.253 kb on + strandat 680.253 kb on + strandat 680.253 kb on + strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.254 kb on - strandat 680.741 kb on + strandat 680.774 kb on + strandat 680.775 kb on - strandat 680.777 kb on + strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strandat 680.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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678,231 - ABID97_RS03350 0.25 -2.0
678,404 + ABID97_RS03350 0.47 -0.2
678,404 + ABID97_RS03350 0.47 -0.4
678,404 + ABID97_RS03350 0.47 -0.1
678,405 - ABID97_RS03350 0.47 -0.0
678,405 - ABID97_RS03350 0.47 -0.0
678,620 + ABID97_RS03350 0.73 +2.1
678,620 + ABID97_RS03350 0.73 -0.3
678,620 + ABID97_RS03350 0.73 -0.4
678,620 + ABID97_RS03350 0.73 +0.3
678,620 + ABID97_RS03350 0.73 -0.4
678,620 + ABID97_RS03350 0.73 -0.3
678,621 - ABID97_RS03350 0.73 +0.2
678,621 - ABID97_RS03350 0.73 -1.0
678,621 - ABID97_RS03350 0.73 +0.9
678,621 - ABID97_RS03350 0.73 -0.2
678,621 - ABID97_RS03350 0.73 +0.9
678,641 + ABID97_RS03350 0.76 +0.0
678,641 + ABID97_RS03350 0.76 -0.2
678,641 + ABID97_RS03350 0.76 -0.6
678,641 + ABID97_RS03350 0.76 -0.2
678,641 + ABID97_RS03350 0.76 +0.1
678,641 + ABID97_RS03350 0.76 -0.3
678,641 + ABID97_RS03350 0.76 +0.3
678,641 + ABID97_RS03350 0.76 -0.7
678,641 + ABID97_RS03350 0.76 -0.0
678,642 - ABID97_RS03350 0.76 +0.1
678,642 - ABID97_RS03350 0.76 -1.9
678,642 - ABID97_RS03350 0.76 -0.3
678,642 - ABID97_RS03350 0.76 -0.1
678,725 + ABID97_RS03350 0.86 -0.3
678,726 - ABID97_RS03350 0.86 -0.0
678,726 - ABID97_RS03350 0.86 +0.1
678,726 - ABID97_RS03350 0.86 -0.2
678,848 + +1.3
678,848 + +0.2
678,848 + -0.4
678,868 + -0.4
678,868 + +1.0
678,869 - +0.0
678,869 - -0.2
678,869 - -1.5
678,869 - -0.2
678,869 - -0.2
678,910 + +0.1
678,917 - -0.0
679,514 + ABID97_RS03360 0.38 -0.6
679,515 - ABID97_RS03360 0.38 -0.3
679,574 + ABID97_RS03360 0.44 +0.0
679,574 + ABID97_RS03360 0.44 +0.1
679,574 + ABID97_RS03360 0.44 +0.2
679,574 + ABID97_RS03360 0.44 -0.4
679,574 + ABID97_RS03360 0.44 +0.1
679,574 + ABID97_RS03360 0.44 -0.2
679,574 + ABID97_RS03360 0.44 +0.1
679,574 + ABID97_RS03360 0.44 -0.1
679,574 + ABID97_RS03360 0.44 +0.1
679,575 - ABID97_RS03360 0.44 -0.3
679,575 - ABID97_RS03360 0.44 -0.7
679,575 - ABID97_RS03360 0.44 -1.3
679,575 - ABID97_RS03360 0.44 +0.5
679,575 - ABID97_RS03360 0.44 -0.2
679,575 - ABID97_RS03360 0.44 -0.3
679,575 - ABID97_RS03360 0.44 +0.4
679,575 - ABID97_RS03360 0.44 +0.2
679,575 - ABID97_RS03360 0.44 +0.2
679,586 + ABID97_RS03360 0.45 -0.3
679,664 + ABID97_RS03360 0.53 -0.2
679,746 + ABID97_RS03360 0.61 -0.2
679,747 - ABID97_RS03360 0.61 -0.6
679,747 - ABID97_RS03360 0.61 -0.7
680,155 + -0.1
680,183 + -0.2
680,184 - +0.1
680,184 - +0.0
680,186 + +0.1
680,186 + +0.4
680,186 + -0.9
680,187 - +0.0
680,253 + -0.5
680,253 + -0.4
680,253 + +1.3
680,253 + -0.1
680,254 - +0.1
680,254 - +0.4
680,254 - -0.0
680,254 - -0.8
680,254 - +0.3
680,254 - -0.3
680,254 - -0.6
680,254 - -0.4
680,741 + -0.5
680,774 + -0.1
680,775 - -0.1
680,777 + +1.1
680,778 - -0.4
680,778 - -0.6
680,778 - -0.3
680,778 - -0.2
680,778 - +1.0
680,778 - +0.2

Or see this region's nucleotide sequence