Strain Fitness in Serratia liquefaciens MT49 around IAI46_24600

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24595 and IAI46_24600 are separated by 43 nucleotidesIAI46_24600 and IAI46_24605 are separated by 131 nucleotides IAI46_24595: IAI46_24595 - aquaporin, at 5,252,506 to 5,253,351 _24595 IAI46_24600: IAI46_24600 - glycerol kinase GlpK, at 5,253,395 to 5,254,903 _24600 IAI46_24605: IAI46_24605 - class II fructose-bisphosphatase, at 5,255,035 to 5,256,045 _24605 Position (kb) 5253 5254 5255Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5252.406 kb on - strandat 5252.409 kb on - strandat 5252.439 kb on + strandat 5252.439 kb on + strandat 5252.440 kb on - strandat 5252.469 kb on + strandat 5252.469 kb on + strandat 5252.469 kb on + strandat 5252.470 kb on - strandat 5252.470 kb on - strandat 5252.470 kb on - strandat 5252.470 kb on - strandat 5252.475 kb on + strandat 5252.475 kb on + strandat 5252.505 kb on + strandat 5252.505 kb on + strandat 5252.505 kb on + strandat 5252.506 kb on - strandat 5252.506 kb on - strandat 5252.506 kb on - strandat 5252.531 kb on + strandat 5252.531 kb on + strandat 5252.531 kb on + strandat 5252.532 kb on - strandat 5252.588 kb on + strandat 5252.589 kb on - strandat 5252.647 kb on - strand, within IAI46_24595at 5252.680 kb on + strand, within IAI46_24595at 5252.680 kb on + strand, within IAI46_24595at 5252.680 kb on + strand, within IAI46_24595at 5252.681 kb on - strand, within IAI46_24595at 5252.681 kb on - strand, within IAI46_24595at 5252.681 kb on - strand, within IAI46_24595at 5252.681 kb on - strand, within IAI46_24595at 5252.681 kb on - strand, within IAI46_24595at 5252.768 kb on + strand, within IAI46_24595at 5252.776 kb on + strand, within IAI46_24595at 5252.776 kb on + strand, within IAI46_24595at 5252.776 kb on + strand, within IAI46_24595at 5252.776 kb on + strand, within IAI46_24595at 5252.777 kb on - strand, within IAI46_24595at 5252.777 kb on - strand, within IAI46_24595at 5252.777 kb on - strand, within IAI46_24595at 5252.777 kb on - strand, within IAI46_24595at 5252.777 kb on - strand, within IAI46_24595at 5252.777 kb on - strand, within IAI46_24595at 5252.834 kb on - strand, within IAI46_24595at 5252.834 kb on - strand, within IAI46_24595at 5252.836 kb on + strand, within IAI46_24595at 5252.836 kb on + strand, within IAI46_24595at 5252.836 kb on + strand, within IAI46_24595at 5252.836 kb on + strand, within IAI46_24595at 5252.837 kb on - strand, within IAI46_24595at 5252.837 kb on - strand, within IAI46_24595at 5252.837 kb on - strand, within IAI46_24595at 5252.837 kb on - strand, within IAI46_24595at 5252.871 kb on + strand, within IAI46_24595at 5252.871 kb on + strand, within IAI46_24595at 5252.871 kb on + strand, within IAI46_24595at 5252.919 kb on + strand, within IAI46_24595at 5252.923 kb on + strand, within IAI46_24595at 5253.090 kb on + strand, within IAI46_24595at 5253.090 kb on + strand, within IAI46_24595at 5253.090 kb on + strand, within IAI46_24595at 5253.091 kb on - strand, within IAI46_24595at 5253.154 kb on + strand, within IAI46_24595at 5253.155 kb on - strand, within IAI46_24595at 5253.155 kb on - strand, within IAI46_24595at 5253.155 kb on - strand, within IAI46_24595at 5253.199 kb on - strand, within IAI46_24595at 5253.205 kb on + strand, within IAI46_24595at 5253.205 kb on + strand, within IAI46_24595at 5253.305 kb on + strandat 5253.306 kb on - strandat 5253.306 kb on - strandat 5253.388 kb on + strandat 5253.388 kb on + strandat 5253.388 kb on + strandat 5253.388 kb on + strandat 5253.389 kb on - strandat 5253.389 kb on - strandat 5253.389 kb on - strandat 5253.389 kb on - strandat 5253.436 kb on + strandat 5253.547 kb on + strand, within IAI46_24600at 5253.693 kb on - strand, within IAI46_24600at 5253.767 kb on + strand, within IAI46_24600at 5253.767 kb on + strand, within IAI46_24600at 5253.768 kb on - strand, within IAI46_24600at 5253.768 kb on - strand, within IAI46_24600at 5253.768 kb on - strand, within IAI46_24600at 5253.768 kb on - strand, within IAI46_24600at 5253.768 kb on - strand, within IAI46_24600at 5253.803 kb on + strand, within IAI46_24600at 5253.803 kb on + strand, within IAI46_24600at 5253.804 kb on - strand, within IAI46_24600at 5253.804 kb on - strand, within IAI46_24600at 5253.822 kb on + strand, within IAI46_24600at 5253.822 kb on + strand, within IAI46_24600at 5253.823 kb on - strand, within IAI46_24600at 5253.947 kb on + strand, within IAI46_24600at 5253.964 kb on + strand, within IAI46_24600at 5253.964 kb on + strand, within IAI46_24600at 5253.965 kb on - strand, within IAI46_24600at 5253.965 kb on - strand, within IAI46_24600at 5253.965 kb on - strand, within IAI46_24600at 5253.965 kb on - strand, within IAI46_24600at 5254.070 kb on + strand, within IAI46_24600at 5254.071 kb on - strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.108 kb on + strand, within IAI46_24600at 5254.109 kb on - strand, within IAI46_24600at 5254.193 kb on + strand, within IAI46_24600at 5254.298 kb on + strand, within IAI46_24600at 5254.299 kb on - strand, within IAI46_24600at 5254.336 kb on + strand, within IAI46_24600at 5254.391 kb on + strand, within IAI46_24600at 5254.427 kb on + strand, within IAI46_24600at 5254.427 kb on + strand, within IAI46_24600at 5254.427 kb on + strand, within IAI46_24600at 5254.428 kb on - strand, within IAI46_24600at 5254.428 kb on - strand, within IAI46_24600at 5254.463 kb on + strand, within IAI46_24600at 5254.476 kb on - strand, within IAI46_24600at 5254.556 kb on + strand, within IAI46_24600at 5254.557 kb on - strand, within IAI46_24600at 5254.837 kb on + strandat 5254.838 kb on - strandat 5254.838 kb on - strandat 5254.989 kb on + strandat 5254.989 kb on + strandat 5255.049 kb on - strandat 5255.049 kb on - strandat 5255.070 kb on + strandat 5255.160 kb on + strand, within IAI46_24605at 5255.160 kb on + strand, within IAI46_24605at 5255.161 kb on - strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.233 kb on + strand, within IAI46_24605at 5255.234 kb on - strand, within IAI46_24605at 5255.234 kb on - strand, within IAI46_24605at 5255.302 kb on - strand, within IAI46_24605at 5255.302 kb on - strand, within IAI46_24605at 5255.343 kb on - strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.389 kb on + strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.390 kb on - strand, within IAI46_24605at 5255.391 kb on + strand, within IAI46_24605at 5255.439 kb on + strand, within IAI46_24605at 5255.466 kb on + strand, within IAI46_24605at 5255.467 kb on - strand, within IAI46_24605at 5255.577 kb on - strand, within IAI46_24605at 5255.577 kb on - strand, within IAI46_24605at 5255.600 kb on + strand, within IAI46_24605at 5255.600 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.610 kb on + strand, within IAI46_24605at 5255.622 kb on + strand, within IAI46_24605at 5255.622 kb on + strand, within IAI46_24605at 5255.623 kb on - strand, within IAI46_24605at 5255.623 kb on - strand, within IAI46_24605at 5255.650 kb on + strand, within IAI46_24605at 5255.651 kb on - strand, within IAI46_24605at 5255.716 kb on - strand, within IAI46_24605at 5255.775 kb on + strand, within IAI46_24605

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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5,252,406 - +2.3
5,252,409 - +0.3
5,252,439 + +0.7
5,252,439 + +0.7
5,252,440 - -2.1
5,252,469 + +0.2
5,252,469 + +1.0
5,252,469 + +0.8
5,252,470 - +0.0
5,252,470 - +0.1
5,252,470 - -0.9
5,252,470 - -0.1
5,252,475 + -1.2
5,252,475 + +0.4
5,252,505 + -0.3
5,252,505 + +0.1
5,252,505 + -1.3
5,252,506 - +1.1
5,252,506 - -2.5
5,252,506 - -0.3
5,252,531 + -0.8
5,252,531 + +0.1
5,252,531 + +0.9
5,252,532 - +0.3
5,252,588 + -1.4
5,252,589 - +2.2
5,252,647 - IAI46_24595 0.17 -1.0
5,252,680 + IAI46_24595 0.21 -0.5
5,252,680 + IAI46_24595 0.21 -0.5
5,252,680 + IAI46_24595 0.21 -1.0
5,252,681 - IAI46_24595 0.21 -1.1
5,252,681 - IAI46_24595 0.21 -1.0
5,252,681 - IAI46_24595 0.21 +0.4
5,252,681 - IAI46_24595 0.21 -1.0
5,252,681 - IAI46_24595 0.21 +1.5
5,252,768 + IAI46_24595 0.31 -3.2
5,252,776 + IAI46_24595 0.32 +0.4
5,252,776 + IAI46_24595 0.32 +0.1
5,252,776 + IAI46_24595 0.32 -0.8
5,252,776 + IAI46_24595 0.32 -2.2
5,252,777 - IAI46_24595 0.32 +1.3
5,252,777 - IAI46_24595 0.32 +0.9
5,252,777 - IAI46_24595 0.32 -0.1
5,252,777 - IAI46_24595 0.32 -0.3
5,252,777 - IAI46_24595 0.32 +0.3
5,252,777 - IAI46_24595 0.32 +0.6
5,252,834 - IAI46_24595 0.39 -0.5
5,252,834 - IAI46_24595 0.39 -1.1
5,252,836 + IAI46_24595 0.39 -0.0
5,252,836 + IAI46_24595 0.39 -2.1
5,252,836 + IAI46_24595 0.39 +1.0
5,252,836 + IAI46_24595 0.39 -2.1
5,252,837 - IAI46_24595 0.39 -0.2
5,252,837 - IAI46_24595 0.39 +0.3
5,252,837 - IAI46_24595 0.39 +0.9
5,252,837 - IAI46_24595 0.39 -3.1
5,252,871 + IAI46_24595 0.43 +0.7
5,252,871 + IAI46_24595 0.43 -1.0
5,252,871 + IAI46_24595 0.43 +0.4
5,252,919 + IAI46_24595 0.49 +0.5
5,252,923 + IAI46_24595 0.49 -1.8
5,253,090 + IAI46_24595 0.69 -0.3
5,253,090 + IAI46_24595 0.69 -2.4
5,253,090 + IAI46_24595 0.69 +0.2
5,253,091 - IAI46_24595 0.69 +0.5
5,253,154 + IAI46_24595 0.77 +0.2
5,253,155 - IAI46_24595 0.77 -2.2
5,253,155 - IAI46_24595 0.77 +2.5
5,253,155 - IAI46_24595 0.77 -0.1
5,253,199 - IAI46_24595 0.82 +1.1
5,253,205 + IAI46_24595 0.83 +1.0
5,253,205 + IAI46_24595 0.83 -4.1
5,253,305 + +0.2
5,253,306 - +0.7
5,253,306 - -0.7
5,253,388 + -0.8
5,253,388 + -1.7
5,253,388 + -0.0
5,253,388 + -0.8
5,253,389 - +1.1
5,253,389 - -1.5
5,253,389 - +0.1
5,253,389 - -0.7
5,253,436 + -1.2
5,253,547 + IAI46_24600 0.10 +0.4
5,253,693 - IAI46_24600 0.20 -1.0
5,253,767 + IAI46_24600 0.25 -0.0
5,253,767 + IAI46_24600 0.25 -1.3
5,253,768 - IAI46_24600 0.25 +0.6
5,253,768 - IAI46_24600 0.25 -0.0
5,253,768 - IAI46_24600 0.25 +0.7
5,253,768 - IAI46_24600 0.25 -2.2
5,253,768 - IAI46_24600 0.25 +0.5
5,253,803 + IAI46_24600 0.27 +0.7
5,253,803 + IAI46_24600 0.27 +0.6
5,253,804 - IAI46_24600 0.27 +0.7
5,253,804 - IAI46_24600 0.27 +0.4
5,253,822 + IAI46_24600 0.28 -0.8
5,253,822 + IAI46_24600 0.28 -0.9
5,253,823 - IAI46_24600 0.28 +1.5
5,253,947 + IAI46_24600 0.37 +1.2
5,253,964 + IAI46_24600 0.38 -0.0
5,253,964 + IAI46_24600 0.38 -0.7
5,253,965 - IAI46_24600 0.38 +0.4
5,253,965 - IAI46_24600 0.38 +0.0
5,253,965 - IAI46_24600 0.38 +0.2
5,253,965 - IAI46_24600 0.38 +0.1
5,254,070 + IAI46_24600 0.45 +0.0
5,254,071 - IAI46_24600 0.45 -1.0
5,254,108 + IAI46_24600 0.47 +1.2
5,254,108 + IAI46_24600 0.47 -1.8
5,254,108 + IAI46_24600 0.47 +0.3
5,254,108 + IAI46_24600 0.47 -0.7
5,254,109 - IAI46_24600 0.47 +0.7
5,254,193 + IAI46_24600 0.53 -0.5
5,254,298 + IAI46_24600 0.60 +1.2
5,254,299 - IAI46_24600 0.60 +0.8
5,254,336 + IAI46_24600 0.62 -0.6
5,254,391 + IAI46_24600 0.66 -1.5
5,254,427 + IAI46_24600 0.68 -1.8
5,254,427 + IAI46_24600 0.68 +2.7
5,254,427 + IAI46_24600 0.68 -0.5
5,254,428 - IAI46_24600 0.68 +1.0
5,254,428 - IAI46_24600 0.68 +2.2
5,254,463 + IAI46_24600 0.71 +0.5
5,254,476 - IAI46_24600 0.72 -2.6
5,254,556 + IAI46_24600 0.77 +0.1
5,254,557 - IAI46_24600 0.77 -1.5
5,254,837 + +1.1
5,254,838 - +1.0
5,254,838 - -3.1
5,254,989 + -1.4
5,254,989 + +0.9
5,255,049 - +0.2
5,255,049 - +1.2
5,255,070 + -1.6
5,255,160 + IAI46_24605 0.12 +0.9
5,255,160 + IAI46_24605 0.12 -1.5
5,255,161 - IAI46_24605 0.12 +0.6
5,255,233 + IAI46_24605 0.20 -0.1
5,255,233 + IAI46_24605 0.20 +0.5
5,255,233 + IAI46_24605 0.20 +1.3
5,255,233 + IAI46_24605 0.20 -0.7
5,255,233 + IAI46_24605 0.20 -2.7
5,255,233 + IAI46_24605 0.20 -2.0
5,255,233 + IAI46_24605 0.20 -0.9
5,255,234 - IAI46_24605 0.20 +0.1
5,255,234 - IAI46_24605 0.20 -1.4
5,255,302 - IAI46_24605 0.26 +0.5
5,255,302 - IAI46_24605 0.26 +1.4
5,255,343 - IAI46_24605 0.30 +0.1
5,255,389 + IAI46_24605 0.35 +1.7
5,255,389 + IAI46_24605 0.35 +0.3
5,255,389 + IAI46_24605 0.35 +0.7
5,255,389 + IAI46_24605 0.35 +0.3
5,255,389 + IAI46_24605 0.35 -0.3
5,255,389 + IAI46_24605 0.35 +1.1
5,255,389 + IAI46_24605 0.35 +0.4
5,255,389 + IAI46_24605 0.35 -2.5
5,255,389 + IAI46_24605 0.35 +0.1
5,255,389 + IAI46_24605 0.35 -1.3
5,255,389 + IAI46_24605 0.35 -0.4
5,255,389 + IAI46_24605 0.35 -0.9
5,255,389 + IAI46_24605 0.35 +0.5
5,255,389 + IAI46_24605 0.35 +0.3
5,255,389 + IAI46_24605 0.35 +0.8
5,255,389 + IAI46_24605 0.35 +0.3
5,255,389 + IAI46_24605 0.35 -2.4
5,255,389 + IAI46_24605 0.35 -3.1
5,255,389 + IAI46_24605 0.35 -0.3
5,255,390 - IAI46_24605 0.35 -0.0
5,255,390 - IAI46_24605 0.35 -0.3
5,255,390 - IAI46_24605 0.35 +0.8
5,255,390 - IAI46_24605 0.35 -1.4
5,255,390 - IAI46_24605 0.35 +0.1
5,255,390 - IAI46_24605 0.35 +1.4
5,255,390 - IAI46_24605 0.35 +0.7
5,255,390 - IAI46_24605 0.35 -0.4
5,255,390 - IAI46_24605 0.35 -0.5
5,255,390 - IAI46_24605 0.35 -0.1
5,255,390 - IAI46_24605 0.35 +1.1
5,255,390 - IAI46_24605 0.35 +0.7
5,255,390 - IAI46_24605 0.35 +0.1
5,255,390 - IAI46_24605 0.35 +0.5
5,255,391 + IAI46_24605 0.35 -2.7
5,255,439 + IAI46_24605 0.40 +1.0
5,255,466 + IAI46_24605 0.43 +0.5
5,255,467 - IAI46_24605 0.43 -1.1
5,255,577 - IAI46_24605 0.54 +0.0
5,255,577 - IAI46_24605 0.54 +0.9
5,255,600 + IAI46_24605 0.56 -1.0
5,255,600 + IAI46_24605 0.56 -1.0
5,255,610 + IAI46_24605 0.57 +2.3
5,255,610 + IAI46_24605 0.57 -2.5
5,255,610 + IAI46_24605 0.57 -1.6
5,255,610 + IAI46_24605 0.57 -0.3
5,255,622 + IAI46_24605 0.58 +0.2
5,255,622 + IAI46_24605 0.58 +1.1
5,255,623 - IAI46_24605 0.58 -1.7
5,255,623 - IAI46_24605 0.58 +0.1
5,255,650 + IAI46_24605 0.61 +0.6
5,255,651 - IAI46_24605 0.61 -1.9
5,255,716 - IAI46_24605 0.67 -1.2
5,255,775 + IAI46_24605 0.73 +0.2

Or see this region's nucleotide sequence