Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24485 and IAI46_24490 are separated by 164 nucleotides IAI46_24490 and IAI46_24495 overlap by 14 nucleotides IAI46_24495 and IAI46_24500 are separated by 36 nucleotides IAI46_24500 and IAI46_24505 are separated by 78 nucleotides
IAI46_24485: IAI46_24485 - dihydrolipoyl dehydrogenase, at 5,226,458 to 5,227,906
_24485
IAI46_24490: IAI46_24490 - toxin HicA, at 5,228,071 to 5,228,331
_24490
IAI46_24495: IAI46_24495 - toxin-antitoxin system HicB family antitoxin, at 5,228,318 to 5,228,644
_24495
IAI46_24500: IAI46_24500 - argininosuccinate lyase, at 5,228,681 to 5,230,054
_24500
IAI46_24505: IAI46_24505 - argininosuccinate synthase, at 5,230,133 to 5,231,353
_24505
Position (kb) 5228
5229
5230
5231 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5227.741 kb on - strand, within IAI46_24485 at 5227.796 kb on + strand at 5227.796 kb on + strand at 5227.796 kb on + strand at 5227.796 kb on + strand at 5227.797 kb on - strand at 5227.825 kb on + strand at 5227.904 kb on + strand at 5227.904 kb on + strand at 5227.905 kb on - strand at 5227.920 kb on + strand at 5227.920 kb on + strand at 5227.920 kb on + strand at 5227.920 kb on + strand at 5227.920 kb on + strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.921 kb on - strand at 5227.924 kb on + strand at 5227.924 kb on + strand at 5228.201 kb on - strand, within IAI46_24490 at 5228.201 kb on - strand, within IAI46_24490 at 5228.201 kb on - strand, within IAI46_24490 at 5228.232 kb on + strand, within IAI46_24490 at 5228.232 kb on + strand, within IAI46_24490 at 5228.233 kb on - strand, within IAI46_24490 at 5228.235 kb on + strand, within IAI46_24490 at 5228.236 kb on - strand, within IAI46_24490 at 5228.236 kb on - strand, within IAI46_24490 at 5228.236 kb on - strand, within IAI46_24490 at 5228.237 kb on + strand, within IAI46_24490 at 5228.237 kb on + strand, within IAI46_24490 at 5228.237 kb on + strand, within IAI46_24490 at 5228.237 kb on + strand, within IAI46_24490 at 5228.237 kb on + strand, within IAI46_24490 at 5228.237 kb on + strand, within IAI46_24490 at 5228.237 kb on + strand, within IAI46_24490 at 5228.238 kb on - strand, within IAI46_24490 at 5228.238 kb on - strand, within IAI46_24490 at 5228.238 kb on - strand, within IAI46_24490 at 5228.238 kb on - strand, within IAI46_24490 at 5228.238 kb on - strand, within IAI46_24490 at 5228.238 kb on - strand, within IAI46_24490 at 5228.267 kb on + strand, within IAI46_24490 at 5228.267 kb on + strand, within IAI46_24490 at 5228.268 kb on - strand, within IAI46_24490 at 5228.268 kb on - strand, within IAI46_24490 at 5228.268 kb on - strand, within IAI46_24490 at 5228.268 kb on - strand, within IAI46_24490 at 5228.268 kb on - strand, within IAI46_24490 at 5228.268 kb on - strand, within IAI46_24490 at 5228.269 kb on + strand, within IAI46_24490 at 5228.269 kb on + strand, within IAI46_24490 at 5228.270 kb on - strand, within IAI46_24490 at 5228.336 kb on + strand at 5228.336 kb on + strand at 5228.336 kb on + strand at 5228.336 kb on + strand at 5228.337 kb on - strand at 5228.342 kb on + strand at 5228.343 kb on - strand at 5228.375 kb on + strand, within IAI46_24495 at 5228.375 kb on + strand, within IAI46_24495 at 5228.375 kb on + strand, within IAI46_24495 at 5228.375 kb on + strand, within IAI46_24495 at 5228.375 kb on + strand, within IAI46_24495 at 5228.376 kb on - strand, within IAI46_24495 at 5228.376 kb on - strand, within IAI46_24495 at 5228.446 kb on + strand, within IAI46_24495 at 5228.551 kb on + strand, within IAI46_24495 at 5228.551 kb on + strand, within IAI46_24495 at 5228.551 kb on + strand, within IAI46_24495 at 5228.552 kb on - strand, within IAI46_24495 at 5228.552 kb on - strand, within IAI46_24495 at 5228.590 kb on + strand, within IAI46_24495 at 5228.590 kb on + strand, within IAI46_24495 at 5228.591 kb on - strand, within IAI46_24495 at 5228.591 kb on - strand, within IAI46_24495 at 5228.592 kb on + strand, within IAI46_24495 at 5228.592 kb on + strand, within IAI46_24495 at 5228.592 kb on + strand, within IAI46_24495 at 5228.592 kb on + strand, within IAI46_24495 at 5228.645 kb on + strand at 5228.790 kb on + strand at 5228.792 kb on + strand at 5228.792 kb on + strand at 5228.792 kb on + strand at 5228.792 kb on + strand at 5228.792 kb on + strand at 5228.793 kb on - strand at 5228.793 kb on - strand at 5228.793 kb on - strand at 5228.857 kb on + strand, within IAI46_24500 at 5228.876 kb on + strand, within IAI46_24500 at 5228.896 kb on + strand, within IAI46_24500 at 5228.897 kb on - strand, within IAI46_24500 at 5228.937 kb on + strand, within IAI46_24500 at 5228.987 kb on - strand, within IAI46_24500 at 5228.987 kb on - strand, within IAI46_24500 at 5229.094 kb on + strand, within IAI46_24500 at 5229.095 kb on - strand, within IAI46_24500 at 5229.159 kb on - strand, within IAI46_24500 at 5229.159 kb on - strand, within IAI46_24500 at 5229.159 kb on - strand, within IAI46_24500 at 5229.159 kb on - strand, within IAI46_24500 at 5229.334 kb on + strand, within IAI46_24500 at 5229.334 kb on + strand, within IAI46_24500 at 5229.540 kb on + strand, within IAI46_24500 at 5229.540 kb on + strand, within IAI46_24500 at 5229.541 kb on - strand, within IAI46_24500 at 5229.592 kb on + strand, within IAI46_24500 at 5229.592 kb on + strand, within IAI46_24500 at 5229.805 kb on + strand, within IAI46_24500 at 5229.805 kb on + strand, within IAI46_24500 at 5229.805 kb on + strand, within IAI46_24500 at 5229.805 kb on + strand, within IAI46_24500 at 5229.849 kb on - strand, within IAI46_24500 at 5229.849 kb on - strand, within IAI46_24500 at 5229.909 kb on - strand, within IAI46_24500 at 5229.909 kb on - strand, within IAI46_24500 at 5229.950 kb on + strand at 5229.951 kb on - strand at 5229.951 kb on - strand at 5229.998 kb on + strand at 5229.998 kb on + strand at 5229.999 kb on - strand at 5229.999 kb on - strand at 5230.054 kb on + strand at 5230.055 kb on - strand at 5230.059 kb on + strand at 5230.059 kb on + strand at 5230.059 kb on + strand at 5230.060 kb on - strand at 5230.060 kb on - strand at 5230.060 kb on - strand at 5230.060 kb on - strand at 5230.060 kb on - strand at 5230.080 kb on + strand at 5230.081 kb on - strand at 5230.105 kb on - strand at 5230.121 kb on + strand at 5230.134 kb on + strand at 5230.134 kb on + strand at 5230.134 kb on + strand at 5230.134 kb on + strand at 5230.135 kb on - strand at 5230.135 kb on - strand at 5230.135 kb on - strand at 5230.192 kb on + strand at 5230.218 kb on + strand at 5230.305 kb on + strand, within IAI46_24505 at 5230.401 kb on + strand, within IAI46_24505 at 5230.401 kb on + strand, within IAI46_24505 at 5230.401 kb on + strand, within IAI46_24505 at 5230.402 kb on - strand, within IAI46_24505 at 5230.402 kb on - strand, within IAI46_24505 at 5230.406 kb on + strand, within IAI46_24505 at 5230.406 kb on + strand, within IAI46_24505 at 5230.406 kb on + strand, within IAI46_24505 at 5230.406 kb on + strand, within IAI46_24505 at 5230.407 kb on - strand, within IAI46_24505 at 5230.407 kb on - strand, within IAI46_24505 at 5230.410 kb on + strand, within IAI46_24505 at 5230.411 kb on - strand, within IAI46_24505 at 5230.411 kb on - strand, within IAI46_24505 at 5230.411 kb on - strand, within IAI46_24505 at 5230.564 kb on + strand, within IAI46_24505 at 5230.623 kb on + strand, within IAI46_24505 at 5230.623 kb on + strand, within IAI46_24505 at 5230.655 kb on + strand, within IAI46_24505 at 5230.742 kb on - strand, within IAI46_24505 at 5230.789 kb on + strand, within IAI46_24505 at 5230.789 kb on + strand, within IAI46_24505 at 5230.789 kb on + strand, within IAI46_24505 at 5230.789 kb on + strand, within IAI46_24505 at 5230.789 kb on + strand, within IAI46_24505 at 5230.789 kb on + strand, within IAI46_24505 at 5230.789 kb on + strand, within IAI46_24505 at 5230.790 kb on - strand, within IAI46_24505 at 5230.790 kb on - strand, within IAI46_24505 at 5230.790 kb on - strand, within IAI46_24505 at 5230.790 kb on - strand, within IAI46_24505 at 5230.790 kb on - strand, within IAI46_24505 at 5230.790 kb on - strand, within IAI46_24505 at 5230.816 kb on - strand, within IAI46_24505 at 5230.864 kb on - strand, within IAI46_24505 at 5230.942 kb on + strand, within IAI46_24505 at 5230.942 kb on + strand, within IAI46_24505 at 5230.945 kb on - strand, within IAI46_24505 at 5230.945 kb on - strand, within IAI46_24505 at 5230.945 kb on - strand, within IAI46_24505 at 5230.945 kb on - strand, within IAI46_24505
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 5,227,741 - IAI46_24485 0.89 +1.4 5,227,796 + -0.1 5,227,796 + +0.0 5,227,796 + -0.7 5,227,796 + -0.9 5,227,797 - -1.2 5,227,825 + -1.6 5,227,904 + -1.0 5,227,904 + -0.5 5,227,905 - -0.9 5,227,920 + -0.9 5,227,920 + +1.4 5,227,920 + +1.0 5,227,920 + -1.4 5,227,920 + +0.7 5,227,921 - +0.9 5,227,921 - -2.1 5,227,921 - +0.1 5,227,921 - +2.2 5,227,921 - -1.8 5,227,921 - +1.7 5,227,921 - +1.1 5,227,921 - -1.5 5,227,921 - -0.2 5,227,921 - +0.7 5,227,921 - +2.2 5,227,924 + +1.2 5,227,924 + -2.8 5,228,201 - IAI46_24490 0.50 +1.0 5,228,201 - IAI46_24490 0.50 -2.0 5,228,201 - IAI46_24490 0.50 +1.3 5,228,232 + IAI46_24490 0.62 -0.3 5,228,232 + IAI46_24490 0.62 +0.0 5,228,233 - IAI46_24490 0.62 -0.6 5,228,235 + IAI46_24490 0.63 +0.7 5,228,236 - IAI46_24490 0.63 +0.1 5,228,236 - IAI46_24490 0.63 -1.3 5,228,236 - IAI46_24490 0.63 +0.9 5,228,237 + IAI46_24490 0.64 -2.1 5,228,237 + IAI46_24490 0.64 +2.2 5,228,237 + IAI46_24490 0.64 -0.3 5,228,237 + IAI46_24490 0.64 -0.5 5,228,237 + IAI46_24490 0.64 -0.4 5,228,237 + IAI46_24490 0.64 -2.6 5,228,237 + IAI46_24490 0.64 +1.0 5,228,238 - IAI46_24490 0.64 +0.7 5,228,238 - IAI46_24490 0.64 -0.8 5,228,238 - IAI46_24490 0.64 -1.8 5,228,238 - IAI46_24490 0.64 -1.3 5,228,238 - IAI46_24490 0.64 -1.8 5,228,238 - IAI46_24490 0.64 +0.5 5,228,267 + IAI46_24490 0.75 +0.6 5,228,267 + IAI46_24490 0.75 +0.3 5,228,268 - IAI46_24490 0.75 +0.2 5,228,268 - IAI46_24490 0.75 -0.5 5,228,268 - IAI46_24490 0.75 -0.2 5,228,268 - IAI46_24490 0.75 -0.4 5,228,268 - IAI46_24490 0.75 -0.2 5,228,268 - IAI46_24490 0.75 +0.9 5,228,269 + IAI46_24490 0.76 -0.3 5,228,269 + IAI46_24490 0.76 -1.1 5,228,270 - IAI46_24490 0.76 -0.6 5,228,336 + -1.0 5,228,336 + -0.1 5,228,336 + -0.1 5,228,336 + -2.9 5,228,337 - -0.2 5,228,342 + -1.5 5,228,343 - +0.8 5,228,375 + IAI46_24495 0.17 +0.2 5,228,375 + IAI46_24495 0.17 -1.0 5,228,375 + IAI46_24495 0.17 -1.4 5,228,375 + IAI46_24495 0.17 +0.9 5,228,375 + IAI46_24495 0.17 -1.2 5,228,376 - IAI46_24495 0.18 -1.2 5,228,376 - IAI46_24495 0.18 +0.1 5,228,446 + IAI46_24495 0.39 +0.5 5,228,551 + IAI46_24495 0.71 -1.6 5,228,551 + IAI46_24495 0.71 +0.8 5,228,551 + IAI46_24495 0.71 -0.8 5,228,552 - IAI46_24495 0.72 -0.3 5,228,552 - IAI46_24495 0.72 -1.1 5,228,590 + IAI46_24495 0.83 +2.0 5,228,590 + IAI46_24495 0.83 +0.4 5,228,591 - IAI46_24495 0.83 -2.2 5,228,591 - IAI46_24495 0.83 -0.3 5,228,592 + IAI46_24495 0.84 -0.5 5,228,592 + IAI46_24495 0.84 -0.0 5,228,592 + IAI46_24495 0.84 -0.9 5,228,592 + IAI46_24495 0.84 +2.0 5,228,645 + +0.3 5,228,790 + -1.3 5,228,792 + -2.9 5,228,792 + -2.0 5,228,792 + -2.7 5,228,792 + -2.1 5,228,792 + -3.2 5,228,793 - -2.7 5,228,793 - -0.1 5,228,793 - -2.1 5,228,857 + IAI46_24500 0.13 +0.1 5,228,876 + IAI46_24500 0.14 -1.2 5,228,896 + IAI46_24500 0.16 -2.2 5,228,897 - IAI46_24500 0.16 -3.3 5,228,937 + IAI46_24500 0.19 -1.4 5,228,987 - IAI46_24500 0.22 -1.2 5,228,987 - IAI46_24500 0.22 -0.9 5,229,094 + IAI46_24500 0.30 -1.6 5,229,095 - IAI46_24500 0.30 -2.0 5,229,159 - IAI46_24500 0.35 -2.5 5,229,159 - IAI46_24500 0.35 -0.3 5,229,159 - IAI46_24500 0.35 -0.8 5,229,159 - IAI46_24500 0.35 -0.9 5,229,334 + IAI46_24500 0.48 -1.1 5,229,334 + IAI46_24500 0.48 -2.4 5,229,540 + IAI46_24500 0.63 -0.6 5,229,540 + IAI46_24500 0.63 -3.7 5,229,541 - IAI46_24500 0.63 +0.8 5,229,592 + IAI46_24500 0.66 -4.2 5,229,592 + IAI46_24500 0.66 -1.5 5,229,805 + IAI46_24500 0.82 -1.9 5,229,805 + IAI46_24500 0.82 -0.2 5,229,805 + IAI46_24500 0.82 +0.8 5,229,805 + IAI46_24500 0.82 -2.4 5,229,849 - IAI46_24500 0.85 +0.1 5,229,849 - IAI46_24500 0.85 -0.4 5,229,909 - IAI46_24500 0.89 -0.3 5,229,909 - IAI46_24500 0.89 -3.5 5,229,950 + -0.2 5,229,951 - -1.6 5,229,951 - -1.3 5,229,998 + -0.8 5,229,998 + -3.6 5,229,999 - -1.1 5,229,999 - +0.2 5,230,054 + +0.9 5,230,055 - -0.7 5,230,059 + +0.5 5,230,059 + -1.2 5,230,059 + +0.5 5,230,060 - -1.6 5,230,060 - -2.8 5,230,060 - +1.8 5,230,060 - -1.4 5,230,060 - -0.2 5,230,080 + -1.8 5,230,081 - +1.0 5,230,105 - -0.2 5,230,121 + -0.6 5,230,134 + -1.5 5,230,134 + -0.1 5,230,134 + +0.6 5,230,134 + -2.7 5,230,135 - -0.3 5,230,135 - -1.3 5,230,135 - -0.4 5,230,192 + -2.2 5,230,218 + -0.1 5,230,305 + IAI46_24505 0.14 -0.4 5,230,401 + IAI46_24505 0.22 -2.3 5,230,401 + IAI46_24505 0.22 -2.9 5,230,401 + IAI46_24505 0.22 -1.6 5,230,402 - IAI46_24505 0.22 -0.5 5,230,402 - IAI46_24505 0.22 -0.6 5,230,406 + IAI46_24505 0.22 -0.9 5,230,406 + IAI46_24505 0.22 -1.6 5,230,406 + IAI46_24505 0.22 -0.9 5,230,406 + IAI46_24505 0.22 -1.6 5,230,407 - IAI46_24505 0.22 -2.8 5,230,407 - IAI46_24505 0.22 -1.4 5,230,410 + IAI46_24505 0.23 -0.3 5,230,411 - IAI46_24505 0.23 -3.4 5,230,411 - IAI46_24505 0.23 -2.7 5,230,411 - IAI46_24505 0.23 +0.7 5,230,564 + IAI46_24505 0.35 -1.3 5,230,623 + IAI46_24505 0.40 -0.7 5,230,623 + IAI46_24505 0.40 -0.2 5,230,655 + IAI46_24505 0.43 +0.6 5,230,742 - IAI46_24505 0.50 -1.0 5,230,789 + IAI46_24505 0.54 -1.6 5,230,789 + IAI46_24505 0.54 -0.9 5,230,789 + IAI46_24505 0.54 -1.0 5,230,789 + IAI46_24505 0.54 -0.7 5,230,789 + IAI46_24505 0.54 -2.3 5,230,789 + IAI46_24505 0.54 -1.6 5,230,789 + IAI46_24505 0.54 -1.1 5,230,790 - IAI46_24505 0.54 -3.0 5,230,790 - IAI46_24505 0.54 -1.4 5,230,790 - IAI46_24505 0.54 -0.9 5,230,790 - IAI46_24505 0.54 +0.8 5,230,790 - IAI46_24505 0.54 +1.3 5,230,790 - IAI46_24505 0.54 -2.1 5,230,816 - IAI46_24505 0.56 +0.4 5,230,864 - IAI46_24505 0.60 -1.3 5,230,942 + IAI46_24505 0.66 -0.3 5,230,942 + IAI46_24505 0.66 -1.5 5,230,945 - IAI46_24505 0.67 -2.9 5,230,945 - IAI46_24505 0.67 +0.6 5,230,945 - IAI46_24505 0.67 -1.8 5,230,945 - IAI46_24505 0.67 -2.2
Or see this region's nucleotide sequence