Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24285 and IAI46_24290 are separated by 340 nucleotides IAI46_24290 and IAI46_24295 are separated by 328 nucleotides
IAI46_24285: IAI46_24285 - crotonase/enoyl-CoA hydratase family protein, at 5,183,053 to 5,183,919
_24285
IAI46_24290: IAI46_24290 - inner membrane protein YhjD, at 5,184,260 to 5,185,279
_24290
IAI46_24295: IAI46_24295 - MHS family MFS transporter, at 5,185,608 to 5,186,930
_24295
Position (kb) 5184
5185
5186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5183.282 kb on + strand, within IAI46_24285 at 5183.282 kb on + strand, within IAI46_24285 at 5183.282 kb on + strand, within IAI46_24285 at 5183.282 kb on + strand, within IAI46_24285 at 5183.282 kb on + strand, within IAI46_24285 at 5183.283 kb on - strand, within IAI46_24285 at 5183.283 kb on - strand, within IAI46_24285 at 5183.283 kb on - strand, within IAI46_24285 at 5183.283 kb on - strand, within IAI46_24285 at 5183.283 kb on - strand, within IAI46_24285 at 5183.283 kb on - strand, within IAI46_24285 at 5183.283 kb on - strand, within IAI46_24285 at 5183.385 kb on + strand, within IAI46_24285 at 5183.385 kb on + strand, within IAI46_24285 at 5183.386 kb on - strand, within IAI46_24285 at 5183.412 kb on - strand, within IAI46_24285 at 5183.613 kb on - strand, within IAI46_24285 at 5183.613 kb on - strand, within IAI46_24285 at 5183.644 kb on - strand, within IAI46_24285 at 5183.689 kb on - strand, within IAI46_24285 at 5183.689 kb on - strand, within IAI46_24285 at 5183.689 kb on - strand, within IAI46_24285 at 5183.846 kb on + strand at 5183.846 kb on + strand at 5183.846 kb on + strand at 5183.846 kb on + strand at 5183.847 kb on - strand at 5183.847 kb on - strand at 5183.847 kb on - strand at 5183.847 kb on - strand at 5183.849 kb on + strand at 5183.850 kb on - strand at 5183.850 kb on - strand at 5183.850 kb on - strand at 5183.907 kb on + strand at 5183.907 kb on + strand at 5183.908 kb on - strand at 5183.908 kb on - strand at 5183.908 kb on - strand at 5183.912 kb on - strand at 5183.920 kb on - strand at 5183.996 kb on - strand at 5184.019 kb on + strand at 5184.020 kb on - strand at 5184.020 kb on - strand at 5184.107 kb on + strand at 5184.210 kb on + strand at 5184.212 kb on + strand at 5184.213 kb on - strand at 5184.213 kb on - strand at 5184.232 kb on + strand at 5184.232 kb on + strand at 5184.232 kb on + strand at 5184.232 kb on + strand at 5184.236 kb on + strand at 5184.237 kb on - strand at 5184.258 kb on + strand at 5184.258 kb on + strand at 5184.258 kb on + strand at 5184.258 kb on + strand at 5184.259 kb on - strand at 5184.259 kb on - strand at 5184.259 kb on - strand at 5184.259 kb on - strand at 5184.277 kb on + strand at 5184.277 kb on + strand at 5184.482 kb on + strand, within IAI46_24290 at 5184.482 kb on + strand, within IAI46_24290 at 5184.483 kb on - strand, within IAI46_24290 at 5184.483 kb on - strand, within IAI46_24290 at 5184.583 kb on + strand, within IAI46_24290 at 5184.661 kb on + strand, within IAI46_24290 at 5184.661 kb on + strand, within IAI46_24290 at 5184.661 kb on + strand, within IAI46_24290 at 5184.698 kb on + strand, within IAI46_24290 at 5184.803 kb on + strand, within IAI46_24290 at 5184.804 kb on - strand, within IAI46_24290 at 5184.804 kb on - strand, within IAI46_24290 at 5184.850 kb on + strand, within IAI46_24290 at 5184.924 kb on + strand, within IAI46_24290 at 5184.924 kb on + strand, within IAI46_24290 at 5184.924 kb on + strand, within IAI46_24290 at 5184.924 kb on + strand, within IAI46_24290 at 5184.925 kb on - strand, within IAI46_24290 at 5184.925 kb on - strand, within IAI46_24290 at 5184.925 kb on - strand, within IAI46_24290 at 5184.925 kb on - strand, within IAI46_24290 at 5184.925 kb on - strand, within IAI46_24290 at 5184.983 kb on + strand, within IAI46_24290 at 5184.983 kb on + strand, within IAI46_24290 at 5184.983 kb on + strand, within IAI46_24290 at 5184.983 kb on + strand, within IAI46_24290 at 5184.983 kb on + strand, within IAI46_24290 at 5184.983 kb on + strand, within IAI46_24290 at 5184.984 kb on - strand, within IAI46_24290 at 5184.984 kb on - strand, within IAI46_24290 at 5185.025 kb on - strand, within IAI46_24290 at 5185.087 kb on + strand, within IAI46_24290 at 5185.087 kb on + strand, within IAI46_24290 at 5185.088 kb on - strand, within IAI46_24290 at 5185.123 kb on + strand, within IAI46_24290 at 5185.123 kb on + strand, within IAI46_24290 at 5185.124 kb on - strand, within IAI46_24290 at 5185.178 kb on + strand at 5185.232 kb on + strand at 5185.234 kb on + strand at 5185.234 kb on + strand at 5185.234 kb on + strand at 5185.235 kb on - strand at 5185.235 kb on - strand at 5185.235 kb on - strand at 5185.235 kb on - strand at 5185.235 kb on - strand at 5185.243 kb on + strand at 5185.342 kb on - strand at 5185.394 kb on - strand at 5185.468 kb on - strand at 5185.474 kb on + strand at 5185.475 kb on - strand at 5185.475 kb on - strand at 5185.569 kb on + strand at 5185.569 kb on + strand at 5185.569 kb on + strand at 5185.569 kb on + strand at 5185.569 kb on + strand at 5185.570 kb on - strand at 5185.570 kb on - strand at 5185.570 kb on - strand at 5185.570 kb on - strand at 5185.596 kb on - strand at 5185.604 kb on + strand at 5185.604 kb on + strand at 5185.605 kb on - strand at 5185.607 kb on + strand at 5185.607 kb on + strand at 5185.608 kb on - strand at 5185.608 kb on - strand at 5185.608 kb on - strand at 5185.661 kb on + strand at 5185.731 kb on + strand at 5185.732 kb on - strand at 5185.763 kb on + strand, within IAI46_24295 at 5185.764 kb on - strand, within IAI46_24295 at 5185.889 kb on + strand, within IAI46_24295 at 5185.890 kb on - strand, within IAI46_24295 at 5185.890 kb on - strand, within IAI46_24295 at 5185.959 kb on + strand, within IAI46_24295 at 5185.959 kb on + strand, within IAI46_24295 at 5185.974 kb on - strand, within IAI46_24295 at 5186.095 kb on - strand, within IAI46_24295 at 5186.216 kb on + strand, within IAI46_24295 at 5186.250 kb on + strand, within IAI46_24295 at 5186.251 kb on - strand, within IAI46_24295 at 5186.251 kb on - strand, within IAI46_24295 at 5186.251 kb on - strand, within IAI46_24295 at 5186.254 kb on + strand, within IAI46_24295 at 5186.254 kb on + strand, within IAI46_24295 at 5186.254 kb on + strand, within IAI46_24295 at 5186.254 kb on + strand, within IAI46_24295 at 5186.255 kb on - strand, within IAI46_24295 at 5186.255 kb on - strand, within IAI46_24295 at 5186.255 kb on - strand, within IAI46_24295
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 5,183,282 + IAI46_24285 0.26 +1.0 5,183,282 + IAI46_24285 0.26 -2.1 5,183,282 + IAI46_24285 0.26 -0.5 5,183,282 + IAI46_24285 0.26 -2.3 5,183,282 + IAI46_24285 0.26 +1.2 5,183,283 - IAI46_24285 0.27 +0.1 5,183,283 - IAI46_24285 0.27 -0.4 5,183,283 - IAI46_24285 0.27 +1.0 5,183,283 - IAI46_24285 0.27 +1.5 5,183,283 - IAI46_24285 0.27 -0.7 5,183,283 - IAI46_24285 0.27 +1.0 5,183,283 - IAI46_24285 0.27 +1.0 5,183,385 + IAI46_24285 0.38 +0.8 5,183,385 + IAI46_24285 0.38 +1.6 5,183,386 - IAI46_24285 0.38 +0.3 5,183,412 - IAI46_24285 0.41 -1.1 5,183,613 - IAI46_24285 0.65 +1.4 5,183,613 - IAI46_24285 0.65 -2.0 5,183,644 - IAI46_24285 0.68 +2.0 5,183,689 - IAI46_24285 0.73 +1.5 5,183,689 - IAI46_24285 0.73 +1.3 5,183,689 - IAI46_24285 0.73 -0.4 5,183,846 + -2.6 5,183,846 + -0.2 5,183,846 + +1.9 5,183,846 + +0.8 5,183,847 - +0.8 5,183,847 - -0.1 5,183,847 - +0.8 5,183,847 - +0.5 5,183,849 + -1.9 5,183,850 - +1.8 5,183,850 - +0.0 5,183,850 - +0.3 5,183,907 + -0.9 5,183,907 + +2.1 5,183,908 - +0.1 5,183,908 - -0.8 5,183,908 - +0.7 5,183,912 - -0.6 5,183,920 - +0.2 5,183,996 - -1.7 5,184,019 + +0.6 5,184,020 - -2.4 5,184,020 - +3.4 5,184,107 + -0.0 5,184,210 + +0.1 5,184,212 + +0.7 5,184,213 - -0.4 5,184,213 - -1.1 5,184,232 + -0.4 5,184,232 + -0.5 5,184,232 + +0.7 5,184,232 + +0.6 5,184,236 + +0.3 5,184,237 - -2.4 5,184,258 + +1.2 5,184,258 + -1.8 5,184,258 + +0.1 5,184,258 + +1.5 5,184,259 - +1.0 5,184,259 - +0.1 5,184,259 - -2.0 5,184,259 - +0.2 5,184,277 + -3.2 5,184,277 + +1.4 5,184,482 + IAI46_24290 0.22 +0.6 5,184,482 + IAI46_24290 0.22 -0.3 5,184,483 - IAI46_24290 0.22 +0.4 5,184,483 - IAI46_24290 0.22 -1.6 5,184,583 + IAI46_24290 0.32 -1.4 5,184,661 + IAI46_24290 0.39 +1.5 5,184,661 + IAI46_24290 0.39 +0.1 5,184,661 + IAI46_24290 0.39 +0.5 5,184,698 + IAI46_24290 0.43 +0.4 5,184,803 + IAI46_24290 0.53 +0.4 5,184,804 - IAI46_24290 0.53 +0.3 5,184,804 - IAI46_24290 0.53 -2.0 5,184,850 + IAI46_24290 0.58 +1.5 5,184,924 + IAI46_24290 0.65 +2.3 5,184,924 + IAI46_24290 0.65 -0.6 5,184,924 + IAI46_24290 0.65 +1.4 5,184,924 + IAI46_24290 0.65 -1.1 5,184,925 - IAI46_24290 0.65 +0.1 5,184,925 - IAI46_24290 0.65 -0.6 5,184,925 - IAI46_24290 0.65 +0.4 5,184,925 - IAI46_24290 0.65 +0.6 5,184,925 - IAI46_24290 0.65 -2.3 5,184,983 + IAI46_24290 0.71 +0.5 5,184,983 + IAI46_24290 0.71 +1.0 5,184,983 + IAI46_24290 0.71 -2.6 5,184,983 + IAI46_24290 0.71 -2.1 5,184,983 + IAI46_24290 0.71 -2.8 5,184,983 + IAI46_24290 0.71 +0.7 5,184,984 - IAI46_24290 0.71 +0.3 5,184,984 - IAI46_24290 0.71 +1.1 5,185,025 - IAI46_24290 0.75 -0.3 5,185,087 + IAI46_24290 0.81 -1.1 5,185,087 + IAI46_24290 0.81 -2.1 5,185,088 - IAI46_24290 0.81 -1.1 5,185,123 + IAI46_24290 0.85 +1.4 5,185,123 + IAI46_24290 0.85 -1.9 5,185,124 - IAI46_24290 0.85 +0.3 5,185,178 + +1.1 5,185,232 + +1.9 5,185,234 + -2.7 5,185,234 + -0.9 5,185,234 + +0.8 5,185,235 - -0.3 5,185,235 - +1.1 5,185,235 - +1.5 5,185,235 - -0.9 5,185,235 - +0.8 5,185,243 + -0.5 5,185,342 - -0.5 5,185,394 - +0.6 5,185,468 - -0.3 5,185,474 + -0.1 5,185,475 - -2.2 5,185,475 - +0.1 5,185,569 + +1.0 5,185,569 + +0.2 5,185,569 + +0.3 5,185,569 + -0.3 5,185,569 + +0.6 5,185,570 - +0.1 5,185,570 - +1.2 5,185,570 - -0.9 5,185,570 - -0.6 5,185,596 - -2.5 5,185,604 + -0.9 5,185,604 + +2.6 5,185,605 - -0.6 5,185,607 + +0.5 5,185,607 + -0.3 5,185,608 - +1.0 5,185,608 - +0.4 5,185,608 - -0.8 5,185,661 + +0.5 5,185,731 + -1.3 5,185,732 - +0.8 5,185,763 + IAI46_24295 0.12 -0.8 5,185,764 - IAI46_24295 0.12 +0.6 5,185,889 + IAI46_24295 0.21 +0.9 5,185,890 - IAI46_24295 0.21 -0.2 5,185,890 - IAI46_24295 0.21 -2.0 5,185,959 + IAI46_24295 0.27 -0.1 5,185,959 + IAI46_24295 0.27 -1.3 5,185,974 - IAI46_24295 0.28 -0.4 5,186,095 - IAI46_24295 0.37 -0.3 5,186,216 + IAI46_24295 0.46 +1.1 5,186,250 + IAI46_24295 0.49 -0.4 5,186,251 - IAI46_24295 0.49 -0.4 5,186,251 - IAI46_24295 0.49 -0.1 5,186,251 - IAI46_24295 0.49 -1.4 5,186,254 + IAI46_24295 0.49 -2.3 5,186,254 + IAI46_24295 0.49 +0.1 5,186,254 + IAI46_24295 0.49 -1.8 5,186,254 + IAI46_24295 0.49 +0.2 5,186,255 - IAI46_24295 0.49 -1.0 5,186,255 - IAI46_24295 0.49 +0.1 5,186,255 - IAI46_24295 0.49 +0.9
Or see this region's nucleotide sequence