Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_21390 and IAI46_21395 are separated by 155 nucleotides IAI46_21395 and IAI46_21400 overlap by 1 nucleotides IAI46_21400 and IAI46_21405 overlap by 4 nucleotides
IAI46_21390: IAI46_21390 - glutathione synthase, at 4,536,929 to 4,537,879
_21390
IAI46_21395: IAI46_21395 - YqgE/AlgH family protein, at 4,538,035 to 4,538,598
_21395
IAI46_21400: IAI46_21400 - Holliday junction resolvase RuvX, at 4,538,598 to 4,539,020
_21400
IAI46_21405: IAI46_21405 - type IV pilus twitching motility protein PilT, at 4,539,017 to 4,540,039
_21405
Position (kb) 4538
4539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4537.038 kb on - strand, within IAI46_21390 at 4537.058 kb on + strand, within IAI46_21390 at 4537.059 kb on - strand, within IAI46_21390 at 4537.059 kb on - strand, within IAI46_21390 at 4537.211 kb on + strand, within IAI46_21390 at 4537.211 kb on + strand, within IAI46_21390 at 4537.212 kb on - strand, within IAI46_21390 at 4537.217 kb on + strand, within IAI46_21390 at 4537.217 kb on + strand, within IAI46_21390 at 4537.218 kb on - strand, within IAI46_21390 at 4537.218 kb on - strand, within IAI46_21390 at 4537.218 kb on - strand, within IAI46_21390 at 4537.229 kb on - strand, within IAI46_21390 at 4537.263 kb on + strand, within IAI46_21390 at 4537.263 kb on + strand, within IAI46_21390 at 4537.264 kb on - strand, within IAI46_21390 at 4537.267 kb on + strand, within IAI46_21390 at 4537.267 kb on + strand, within IAI46_21390 at 4537.267 kb on + strand, within IAI46_21390 at 4537.400 kb on - strand, within IAI46_21390 at 4537.436 kb on - strand, within IAI46_21390 at 4537.463 kb on - strand, within IAI46_21390 at 4537.589 kb on + strand, within IAI46_21390 at 4537.806 kb on + strand at 4537.807 kb on - strand at 4537.807 kb on - strand at 4537.986 kb on + strand at 4538.019 kb on + strand at 4538.019 kb on + strand at 4538.028 kb on + strand at 4538.028 kb on + strand at 4538.064 kb on + strand at 4538.107 kb on + strand, within IAI46_21395 at 4538.107 kb on + strand, within IAI46_21395 at 4538.154 kb on + strand, within IAI46_21395 at 4538.286 kb on + strand, within IAI46_21395 at 4538.295 kb on + strand, within IAI46_21395 at 4538.295 kb on + strand, within IAI46_21395 at 4538.366 kb on + strand, within IAI46_21395 at 4538.366 kb on + strand, within IAI46_21395 at 4538.511 kb on + strand, within IAI46_21395 at 4538.562 kb on + strand at 4539.019 kb on - strand at 4539.286 kb on - strand, within IAI46_21405 at 4539.366 kb on - strand, within IAI46_21405 at 4539.470 kb on + strand, within IAI46_21405 at 4539.470 kb on + strand, within IAI46_21405 at 4539.471 kb on - strand, within IAI46_21405 at 4539.471 kb on - strand, within IAI46_21405 at 4539.471 kb on - strand, within IAI46_21405 at 4539.522 kb on - strand, within IAI46_21405 at 4539.522 kb on - strand, within IAI46_21405 at 4539.522 kb on - strand, within IAI46_21405 at 4539.574 kb on + strand, within IAI46_21405
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 4,537,038 - IAI46_21390 0.11 +0.4 4,537,058 + IAI46_21390 0.14 +1.7 4,537,059 - IAI46_21390 0.14 +2.0 4,537,059 - IAI46_21390 0.14 +1.4 4,537,211 + IAI46_21390 0.30 +1.7 4,537,211 + IAI46_21390 0.30 +1.5 4,537,212 - IAI46_21390 0.30 -0.0 4,537,217 + IAI46_21390 0.30 -1.2 4,537,217 + IAI46_21390 0.30 -0.9 4,537,218 - IAI46_21390 0.30 -2.9 4,537,218 - IAI46_21390 0.30 -1.2 4,537,218 - IAI46_21390 0.30 -1.3 4,537,229 - IAI46_21390 0.32 +1.1 4,537,263 + IAI46_21390 0.35 -0.8 4,537,263 + IAI46_21390 0.35 +0.2 4,537,264 - IAI46_21390 0.35 +0.2 4,537,267 + IAI46_21390 0.36 +0.5 4,537,267 + IAI46_21390 0.36 -0.2 4,537,267 + IAI46_21390 0.36 +1.2 4,537,400 - IAI46_21390 0.50 -2.1 4,537,436 - IAI46_21390 0.53 +1.6 4,537,463 - IAI46_21390 0.56 +1.4 4,537,589 + IAI46_21390 0.69 +0.8 4,537,806 + +0.5 4,537,807 - +0.2 4,537,807 - -0.4 4,537,986 + +0.7 4,538,019 + -0.5 4,538,019 + +0.9 4,538,028 + +0.3 4,538,028 + -0.3 4,538,064 + +1.5 4,538,107 + IAI46_21395 0.13 +1.0 4,538,107 + IAI46_21395 0.13 -1.4 4,538,154 + IAI46_21395 0.21 +1.8 4,538,286 + IAI46_21395 0.45 -0.6 4,538,295 + IAI46_21395 0.46 -0.1 4,538,295 + IAI46_21395 0.46 +0.2 4,538,366 + IAI46_21395 0.59 +0.2 4,538,366 + IAI46_21395 0.59 +0.6 4,538,511 + IAI46_21395 0.84 -0.4 4,538,562 + +1.2 4,539,019 - -0.2 4,539,286 - IAI46_21405 0.26 -1.8 4,539,366 - IAI46_21405 0.34 -0.8 4,539,470 + IAI46_21405 0.44 +0.9 4,539,470 + IAI46_21405 0.44 +0.9 4,539,471 - IAI46_21405 0.44 +0.4 4,539,471 - IAI46_21405 0.44 +0.9 4,539,471 - IAI46_21405 0.44 +0.3 4,539,522 - IAI46_21405 0.49 +0.1 4,539,522 - IAI46_21405 0.49 +1.4 4,539,522 - IAI46_21405 0.49 -0.0 4,539,574 + IAI46_21405 0.54 -1.8
Or see this region's nucleotide sequence