Strain Fitness in Serratia liquefaciens MT49 around IAI46_19205

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19200 and IAI46_19205 are separated by 638 nucleotidesIAI46_19205 and IAI46_19210 are separated by 176 nucleotides IAI46_19200: IAI46_19200 - phytanoyl-CoA dioxygenase family protein, at 4,049,437 to 4,050,261 _19200 IAI46_19205: IAI46_19205 - glutamine-hydrolyzing GMP synthase, at 4,050,900 to 4,052,477 _19205 IAI46_19210: IAI46_19210 - IMP dehydrogenase, at 4,052,654 to 4,054,117 _19210 Position (kb) 4050 4051 4052 4053Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4049.922 kb on - strand, within IAI46_19200at 4049.963 kb on - strand, within IAI46_19200at 4050.021 kb on + strand, within IAI46_19200at 4050.161 kb on + strand, within IAI46_19200at 4050.162 kb on - strand, within IAI46_19200at 4050.220 kb on - strandat 4050.223 kb on - strandat 4050.231 kb on + strandat 4050.231 kb on + strandat 4050.260 kb on - strandat 4050.343 kb on - strandat 4050.343 kb on - strandat 4050.453 kb on + strandat 4050.454 kb on - strandat 4050.457 kb on + strandat 4050.463 kb on + strandat 4050.464 kb on - strandat 4050.464 kb on - strandat 4050.510 kb on + strandat 4050.541 kb on + strandat 4050.559 kb on + strandat 4050.563 kb on + strandat 4050.581 kb on + strandat 4050.588 kb on + strandat 4050.588 kb on + strandat 4050.592 kb on + strandat 4050.612 kb on + strandat 4050.612 kb on + strandat 4050.613 kb on - strandat 4050.651 kb on + strandat 4050.763 kb on + strandat 4050.764 kb on - strandat 4050.766 kb on - strandat 4050.777 kb on + strandat 4052.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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4,049,922 - IAI46_19200 0.59 -2.0
4,049,963 - IAI46_19200 0.64 +0.2
4,050,021 + IAI46_19200 0.71 -0.6
4,050,161 + IAI46_19200 0.88 +1.6
4,050,162 - IAI46_19200 0.88 +0.4
4,050,220 - +0.8
4,050,223 - +3.0
4,050,231 + +0.9
4,050,231 + -3.0
4,050,260 - -2.9
4,050,343 - -0.6
4,050,343 - -0.7
4,050,453 + +1.5
4,050,454 - -2.1
4,050,457 + -2.3
4,050,463 + -0.2
4,050,464 - -1.3
4,050,464 - -2.3
4,050,510 + -0.8
4,050,541 + -0.1
4,050,559 + +0.3
4,050,563 + +0.8
4,050,581 + +0.2
4,050,588 + +0.4
4,050,588 + -0.8
4,050,592 + -3.3
4,050,612 + -3.6
4,050,612 + -0.2
4,050,613 - +0.6
4,050,651 + +0.5
4,050,763 + +0.5
4,050,764 - +0.4
4,050,766 - +1.2
4,050,777 + +1.4
4,052,592 - +0.7

Or see this region's nucleotide sequence