Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_17405 and IAI46_17410 are separated by 79 nucleotides IAI46_17410 and IAI46_17415 are separated by 6 nucleotides IAI46_17415 and IAI46_17420 are separated by 112 nucleotides IAI46_17420 and IAI46_17425 overlap by 7 nucleotides
IAI46_17405: IAI46_17405 - HARLDQ motif MBL-fold protein, at 3,654,738 to 3,655,634
_17405
IAI46_17410: IAI46_17410 - LysR family transcriptional regulator, at 3,655,714 to 3,656,616
_17410
IAI46_17415: IAI46_17415 - nuclear transport factor 2 family protein, at 3,656,623 to 3,657,090
_17415
IAI46_17420: IAI46_17420 - TetR/AcrR family transcriptional regulator, at 3,657,203 to 3,657,781
_17420
IAI46_17425: IAI46_17425 - VOC family protein, at 3,657,775 to 3,658,191
_17425
Position (kb)
3656
3657
3658 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3655.669 kb on - strand at 3655.670 kb on + strand at 3655.671 kb on - strand at 3655.709 kb on + strand at 3655.709 kb on + strand at 3655.710 kb on - strand at 3655.932 kb on - strand, within IAI46_17410 at 3656.033 kb on + strand, within IAI46_17410 at 3656.139 kb on + strand, within IAI46_17410 at 3656.139 kb on + strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.197 kb on - strand, within IAI46_17410 at 3656.197 kb on - strand, within IAI46_17410 at 3656.246 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.250 kb on - strand, within IAI46_17410 at 3656.299 kb on + strand, within IAI46_17410 at 3656.299 kb on + strand, within IAI46_17410 at 3656.299 kb on + strand, within IAI46_17410 at 3656.300 kb on - strand, within IAI46_17410 at 3656.302 kb on + strand, within IAI46_17410 at 3656.303 kb on - strand, within IAI46_17410 at 3656.303 kb on - strand, within IAI46_17410 at 3656.303 kb on - strand, within IAI46_17410 at 3656.363 kb on + strand, within IAI46_17410 at 3656.415 kb on - strand, within IAI46_17410 at 3656.441 kb on + strand, within IAI46_17410 at 3656.441 kb on + strand, within IAI46_17410 at 3656.488 kb on + strand, within IAI46_17410 at 3656.489 kb on - strand, within IAI46_17410 at 3656.524 kb on + strand, within IAI46_17410 at 3656.524 kb on + strand, within IAI46_17410 at 3656.524 kb on + strand, within IAI46_17410 at 3656.539 kb on + strand at 3656.605 kb on + strand at 3656.606 kb on - strand at 3656.608 kb on + strand at 3656.609 kb on - strand at 3656.620 kb on + strand at 3656.653 kb on - strand at 3656.712 kb on + strand, within IAI46_17415 at 3656.754 kb on + strand, within IAI46_17415 at 3657.090 kb on + strand at 3657.090 kb on + strand at 3657.090 kb on + strand at 3657.091 kb on - strand at 3657.091 kb on - strand at 3657.091 kb on - strand at 3657.096 kb on - strand at 3657.139 kb on + strand at 3657.140 kb on - strand at 3657.197 kb on - strand at 3657.242 kb on - strand at 3657.282 kb on + strand, within IAI46_17420 at 3657.282 kb on + strand, within IAI46_17420 at 3657.342 kb on - strand, within IAI46_17420 at 3657.437 kb on + strand, within IAI46_17420 at 3657.437 kb on + strand, within IAI46_17420 at 3657.437 kb on + strand, within IAI46_17420 at 3657.462 kb on + strand, within IAI46_17420 at 3657.462 kb on + strand, within IAI46_17420 at 3657.462 kb on + strand, within IAI46_17420 at 3657.462 kb on + strand, within IAI46_17420 at 3657.463 kb on - strand, within IAI46_17420 at 3657.532 kb on + strand, within IAI46_17420 at 3657.621 kb on - strand, within IAI46_17420 at 3657.765 kb on + strand at 3657.779 kb on + strand at 3657.839 kb on + strand, within IAI46_17425 at 3657.840 kb on - strand, within IAI46_17425 at 3657.880 kb on + strand, within IAI46_17425 at 3657.880 kb on + strand, within IAI46_17425 at 3657.880 kb on + strand, within IAI46_17425 at 3657.881 kb on - strand, within IAI46_17425 at 3657.985 kb on - strand, within IAI46_17425 at 3657.986 kb on + strand, within IAI46_17425 at 3657.986 kb on + strand, within IAI46_17425 at 3657.986 kb on + strand, within IAI46_17425 at 3657.987 kb on - strand, within IAI46_17425 at 3657.987 kb on - strand, within IAI46_17425 at 3657.987 kb on - strand, within IAI46_17425
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 3,655,669 - +0.9 3,655,670 + -1.8 3,655,671 - -0.0 3,655,709 + -2.7 3,655,709 + +0.5 3,655,710 - -0.8 3,655,932 - IAI46_17410 0.24 -0.1 3,656,033 + IAI46_17410 0.35 +0.9 3,656,139 + IAI46_17410 0.47 -2.8 3,656,139 + IAI46_17410 0.47 +0.4 3,656,140 - IAI46_17410 0.47 +0.1 3,656,140 - IAI46_17410 0.47 -0.8 3,656,140 - IAI46_17410 0.47 +0.1 3,656,140 - IAI46_17410 0.47 +0.3 3,656,140 - IAI46_17410 0.47 -2.1 3,656,197 - IAI46_17410 0.53 +0.8 3,656,197 - IAI46_17410 0.53 +0.2 3,656,246 + IAI46_17410 0.59 -2.0 3,656,249 + IAI46_17410 0.59 -0.4 3,656,249 + IAI46_17410 0.59 +1.2 3,656,249 + IAI46_17410 0.59 -0.4 3,656,249 + IAI46_17410 0.59 +0.0 3,656,250 - IAI46_17410 0.59 +1.2 3,656,299 + IAI46_17410 0.65 -1.0 3,656,299 + IAI46_17410 0.65 -0.9 3,656,299 + IAI46_17410 0.65 +0.4 3,656,300 - IAI46_17410 0.65 -0.0 3,656,302 + IAI46_17410 0.65 +1.2 3,656,303 - IAI46_17410 0.65 -1.7 3,656,303 - IAI46_17410 0.65 +0.5 3,656,303 - IAI46_17410 0.65 +2.2 3,656,363 + IAI46_17410 0.72 -0.6 3,656,415 - IAI46_17410 0.78 -1.8 3,656,441 + IAI46_17410 0.81 -1.1 3,656,441 + IAI46_17410 0.81 +1.2 3,656,488 + IAI46_17410 0.86 -1.5 3,656,489 - IAI46_17410 0.86 +0.6 3,656,524 + IAI46_17410 0.90 -3.5 3,656,524 + IAI46_17410 0.90 +1.9 3,656,524 + IAI46_17410 0.90 -0.6 3,656,539 + +0.1 3,656,605 + +1.1 3,656,606 - -0.6 3,656,608 + +0.2 3,656,609 - -0.4 3,656,620 + +0.7 3,656,653 - +0.4 3,656,712 + IAI46_17415 0.19 +1.0 3,656,754 + IAI46_17415 0.28 -0.8 3,657,090 + +0.8 3,657,090 + -2.1 3,657,090 + -1.1 3,657,091 - -0.8 3,657,091 - +1.0 3,657,091 - +0.8 3,657,096 - -1.1 3,657,139 + -0.6 3,657,140 - +0.3 3,657,197 - +1.2 3,657,242 - +1.2 3,657,282 + IAI46_17420 0.14 -0.1 3,657,282 + IAI46_17420 0.14 -0.2 3,657,342 - IAI46_17420 0.24 +0.2 3,657,437 + IAI46_17420 0.40 -0.0 3,657,437 + IAI46_17420 0.40 +0.3 3,657,437 + IAI46_17420 0.40 +0.7 3,657,462 + IAI46_17420 0.45 +1.6 3,657,462 + IAI46_17420 0.45 -0.6 3,657,462 + IAI46_17420 0.45 +1.3 3,657,462 + IAI46_17420 0.45 -1.0 3,657,463 - IAI46_17420 0.45 -0.1 3,657,532 + IAI46_17420 0.57 +1.8 3,657,621 - IAI46_17420 0.72 -1.5 3,657,765 + +1.3 3,657,779 + -1.1 3,657,839 + IAI46_17425 0.15 +1.0 3,657,840 - IAI46_17425 0.16 +0.9 3,657,880 + IAI46_17425 0.25 -1.1 3,657,880 + IAI46_17425 0.25 +0.4 3,657,880 + IAI46_17425 0.25 +0.7 3,657,881 - IAI46_17425 0.25 -1.7 3,657,985 - IAI46_17425 0.50 -1.6 3,657,986 + IAI46_17425 0.51 +0.3 3,657,986 + IAI46_17425 0.51 +0.1 3,657,986 + IAI46_17425 0.51 +2.2 3,657,987 - IAI46_17425 0.51 +1.7 3,657,987 - IAI46_17425 0.51 +1.9 3,657,987 - IAI46_17425 0.51 -0.7
Or see this region's nucleotide sequence