Strain Fitness in Serratia liquefaciens MT49 around IAI46_16735

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_16730 and IAI46_16735 overlap by 4 nucleotidesIAI46_16735 and IAI46_16740 overlap by 8 nucleotides IAI46_16730: IAI46_16730 - efflux transporter outer membrane subunit, at 3,506,590 to 3,507,993 _16730 IAI46_16735: IAI46_16735 - efflux RND transporter permease subunit, at 3,507,990 to 3,511,163 _16735 IAI46_16740: IAI46_16740 - efflux RND transporter periplasmic adaptor subunit, at 3,511,156 to 3,512,358 _16740 Position (kb) 3507 3508 3509 3510 3511 3512Strain fitness (log2 ratio) -3 -2 -1 0 1at 3507.103 kb on + strand, within IAI46_16730at 3507.296 kb on + strand, within IAI46_16730at 3507.471 kb on - strand, within IAI46_16730at 3507.618 kb on - strand, within IAI46_16730at 3507.711 kb on + strand, within IAI46_16730at 3507.711 kb on + strand, within IAI46_16730at 3507.712 kb on - strand, within IAI46_16730at 3508.213 kb on - strandat 3508.224 kb on - strandat 3508.390 kb on + strand, within IAI46_16735at 3508.390 kb on + strand, within IAI46_16735at 3508.391 kb on - strand, within IAI46_16735at 3508.493 kb on - strand, within IAI46_16735at 3508.537 kb on + strand, within IAI46_16735at 3508.736 kb on - strand, within IAI46_16735at 3508.895 kb on - strand, within IAI46_16735at 3509.123 kb on + strand, within IAI46_16735at 3509.123 kb on + strand, within IAI46_16735at 3509.177 kb on + strand, within IAI46_16735at 3509.534 kb on - strand, within IAI46_16735at 3509.808 kb on + strand, within IAI46_16735at 3509.808 kb on + strand, within IAI46_16735at 3510.097 kb on + strand, within IAI46_16735at 3510.097 kb on + strand, within IAI46_16735at 3510.098 kb on - strand, within IAI46_16735at 3510.165 kb on - strand, within IAI46_16735at 3510.322 kb on + strand, within IAI46_16735at 3510.322 kb on + strand, within IAI46_16735at 3510.323 kb on - strand, within IAI46_16735at 3510.325 kb on + strand, within IAI46_16735at 3510.326 kb on - strand, within IAI46_16735at 3510.326 kb on - strand, within IAI46_16735at 3510.326 kb on - strand, within IAI46_16735at 3510.326 kb on - strand, within IAI46_16735at 3510.326 kb on - strand, within IAI46_16735at 3510.329 kb on + strand, within IAI46_16735at 3510.340 kb on + strand, within IAI46_16735at 3510.341 kb on - strand, within IAI46_16735at 3510.577 kb on + strand, within IAI46_16735at 3510.577 kb on + strand, within IAI46_16735at 3510.577 kb on + strand, within IAI46_16735at 3510.620 kb on - strand, within IAI46_16735at 3510.678 kb on + strand, within IAI46_16735at 3510.679 kb on - strand, within IAI46_16735at 3510.679 kb on - strand, within IAI46_16735at 3510.682 kb on + strand, within IAI46_16735at 3510.683 kb on - strand, within IAI46_16735at 3510.683 kb on - strand, within IAI46_16735at 3510.694 kb on + strand, within IAI46_16735at 3510.756 kb on - strand, within IAI46_16735at 3510.756 kb on - strand, within IAI46_16735at 3510.850 kb on - strandat 3510.934 kb on + strandat 3511.189 kb on + strandat 3511.590 kb on - strand, within IAI46_16740at 3511.729 kb on + strand, within IAI46_16740at 3511.730 kb on - strand, within IAI46_16740at 3511.807 kb on - strand, within IAI46_16740at 3511.807 kb on - strand, within IAI46_16740at 3511.807 kb on - strand, within IAI46_16740at 3511.839 kb on - strand, within IAI46_16740at 3511.851 kb on + strand, within IAI46_16740at 3511.851 kb on + strand, within IAI46_16740at 3511.852 kb on - strand, within IAI46_16740at 3512.043 kb on - strand, within IAI46_16740at 3512.132 kb on - strand, within IAI46_16740at 3512.132 kb on - strand, within IAI46_16740at 3512.132 kb on - strand, within IAI46_16740at 3512.132 kb on - strand, within IAI46_16740at 3512.132 kb on - strand, within IAI46_16740at 3512.132 kb on - strand, within IAI46_16740at 3512.133 kb on + strand, within IAI46_16740at 3512.133 kb on + strand, within IAI46_16740at 3512.134 kb on - strand, within IAI46_16740

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
3,507,103 + IAI46_16730 0.37 +0.1
3,507,296 + IAI46_16730 0.50 +1.0
3,507,471 - IAI46_16730 0.63 -2.4
3,507,618 - IAI46_16730 0.73 -1.4
3,507,711 + IAI46_16730 0.80 -2.1
3,507,711 + IAI46_16730 0.80 +0.6
3,507,712 - IAI46_16730 0.80 -1.8
3,508,213 - -1.3
3,508,224 - -1.9
3,508,390 + IAI46_16735 0.13 +0.5
3,508,390 + IAI46_16735 0.13 -0.7
3,508,391 - IAI46_16735 0.13 +0.3
3,508,493 - IAI46_16735 0.16 +0.9
3,508,537 + IAI46_16735 0.17 -2.0
3,508,736 - IAI46_16735 0.24 -1.2
3,508,895 - IAI46_16735 0.29 +0.9
3,509,123 + IAI46_16735 0.36 +1.3
3,509,123 + IAI46_16735 0.36 +0.1
3,509,177 + IAI46_16735 0.37 +0.2
3,509,534 - IAI46_16735 0.49 -0.2
3,509,808 + IAI46_16735 0.57 -1.0
3,509,808 + IAI46_16735 0.57 +0.2
3,510,097 + IAI46_16735 0.66 -0.9
3,510,097 + IAI46_16735 0.66 -3.1
3,510,098 - IAI46_16735 0.66 +0.7
3,510,165 - IAI46_16735 0.69 -1.3
3,510,322 + IAI46_16735 0.73 +1.7
3,510,322 + IAI46_16735 0.73 +0.9
3,510,323 - IAI46_16735 0.74 -0.1
3,510,325 + IAI46_16735 0.74 +0.1
3,510,326 - IAI46_16735 0.74 +0.7
3,510,326 - IAI46_16735 0.74 -0.1
3,510,326 - IAI46_16735 0.74 -0.2
3,510,326 - IAI46_16735 0.74 +1.0
3,510,326 - IAI46_16735 0.74 +1.0
3,510,329 + IAI46_16735 0.74 +0.7
3,510,340 + IAI46_16735 0.74 -0.9
3,510,341 - IAI46_16735 0.74 +0.1
3,510,577 + IAI46_16735 0.82 +1.6
3,510,577 + IAI46_16735 0.82 -2.1
3,510,577 + IAI46_16735 0.82 +0.0
3,510,620 - IAI46_16735 0.83 -0.5
3,510,678 + IAI46_16735 0.85 +1.3
3,510,679 - IAI46_16735 0.85 +0.7
3,510,679 - IAI46_16735 0.85 +0.1
3,510,682 + IAI46_16735 0.85 +0.5
3,510,683 - IAI46_16735 0.85 -2.7
3,510,683 - IAI46_16735 0.85 -0.1
3,510,694 + IAI46_16735 0.85 +0.7
3,510,756 - IAI46_16735 0.87 +0.3
3,510,756 - IAI46_16735 0.87 -0.5
3,510,850 - +0.9
3,510,934 + -0.4
3,511,189 + -0.1
3,511,590 - IAI46_16740 0.36 +0.7
3,511,729 + IAI46_16740 0.48 +1.1
3,511,730 - IAI46_16740 0.48 +0.7
3,511,807 - IAI46_16740 0.54 +0.1
3,511,807 - IAI46_16740 0.54 -1.1
3,511,807 - IAI46_16740 0.54 -1.1
3,511,839 - IAI46_16740 0.57 -1.1
3,511,851 + IAI46_16740 0.58 +0.7
3,511,851 + IAI46_16740 0.58 +0.4
3,511,852 - IAI46_16740 0.58 -1.0
3,512,043 - IAI46_16740 0.74 +0.8
3,512,132 - IAI46_16740 0.81 +0.8
3,512,132 - IAI46_16740 0.81 -1.6
3,512,132 - IAI46_16740 0.81 +1.0
3,512,132 - IAI46_16740 0.81 +0.6
3,512,132 - IAI46_16740 0.81 -3.2
3,512,132 - IAI46_16740 0.81 -0.7
3,512,133 + IAI46_16740 0.81 +0.1
3,512,133 + IAI46_16740 0.81 -0.4
3,512,134 - IAI46_16740 0.81 -2.8

Or see this region's nucleotide sequence