Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14880 and IAI46_14885 are separated by 49 nucleotides IAI46_14885 and IAI46_14890 are separated by 99 nucleotides IAI46_14890 and IAI46_14895 are separated by 163 nucleotides IAI46_14895 and IAI46_14900 are separated by 42 nucleotides IAI46_14900 and IAI46_14905 are separated by 200 nucleotides
IAI46_14880: IAI46_14880 - fosfomycin resistance glutathione transferase, at 3,149,282 to 3,149,689
_14880
IAI46_14885: IAI46_14885 - YebO family protein, at 3,149,739 to 3,150,011
_14885
IAI46_14890: IAI46_14890 - PhoP/PhoQ regulator MgrB, at 3,150,111 to 3,150,269
_14890
IAI46_14895: IAI46_14895 - hypothetical protein, at 3,150,433 to 3,150,666
_14895
IAI46_14900: IAI46_14900 - DUF2766 domain-containing protein, at 3,150,709 to 3,150,948
_14900
IAI46_14905: IAI46_14905 - hypothetical protein, at 3,151,149 to 3,151,361
_14905
Position (kb)
3150
3151 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3149.477 kb on + strand, within IAI46_14880 at 3149.667 kb on - strand at 3149.706 kb on - strand at 3149.706 kb on - strand at 3149.754 kb on - strand at 3150.022 kb on - strand at 3150.025 kb on + strand at 3150.025 kb on + strand at 3150.050 kb on + strand at 3150.051 kb on - strand at 3150.051 kb on - strand at 3150.094 kb on - strand at 3150.176 kb on - strand, within IAI46_14890 at 3150.176 kb on - strand, within IAI46_14890 at 3150.179 kb on + strand, within IAI46_14890 at 3150.180 kb on - strand, within IAI46_14890 at 3150.229 kb on - strand, within IAI46_14890 at 3150.298 kb on + strand at 3150.312 kb on + strand at 3150.313 kb on - strand at 3150.398 kb on + strand at 3150.399 kb on - strand at 3150.400 kb on + strand at 3150.419 kb on - strand at 3150.431 kb on + strand at 3150.431 kb on + strand at 3150.438 kb on + strand at 3150.558 kb on + strand, within IAI46_14895 at 3150.948 kb on + strand at 3150.949 kb on - strand at 3150.952 kb on + strand at 3150.952 kb on + strand at 3150.986 kb on - strand at 3151.183 kb on + strand, within IAI46_14905 at 3151.184 kb on - strand, within IAI46_14905 at 3151.184 kb on - strand, within IAI46_14905 at 3151.342 kb on + strand at 3151.359 kb on + strand at 3151.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 3,149,477 + IAI46_14880 0.48 +0.2 3,149,667 - +0.2 3,149,706 - +1.6 3,149,706 - +0.7 3,149,754 - +0.7 3,150,022 - -3.7 3,150,025 + -1.6 3,150,025 + +0.8 3,150,050 + +0.5 3,150,051 - +1.8 3,150,051 - -0.0 3,150,094 - -0.2 3,150,176 - IAI46_14890 0.41 +0.2 3,150,176 - IAI46_14890 0.41 +0.5 3,150,179 + IAI46_14890 0.43 +0.3 3,150,180 - IAI46_14890 0.43 -2.6 3,150,229 - IAI46_14890 0.74 +1.8 3,150,298 + +2.7 3,150,312 + +1.6 3,150,313 - -2.6 3,150,398 + +0.1 3,150,399 - -1.4 3,150,400 + +1.1 3,150,419 - +1.5 3,150,431 + +2.1 3,150,431 + -1.1 3,150,438 + +0.6 3,150,558 + IAI46_14895 0.53 +1.4 3,150,948 + +1.1 3,150,949 - +2.5 3,150,952 + -1.2 3,150,952 + +1.3 3,150,986 - -1.4 3,151,183 + IAI46_14905 0.16 +0.5 3,151,184 - IAI46_14905 0.16 -0.6 3,151,184 - IAI46_14905 0.16 -0.2 3,151,342 + -1.4 3,151,359 + +0.4 3,151,493 - -0.9
Or see this region's nucleotide sequence