Strain Fitness in Serratia liquefaciens MT49 around IAI46_14600

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14595 and IAI46_14600 are separated by 149 nucleotidesIAI46_14600 and IAI46_14605 are separated by 21 nucleotides IAI46_14595: IAI46_14595 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 3,094,342 to 3,095,310 _14595 IAI46_14600: IAI46_14600 - murein DD-endopeptidase MepM, at 3,095,460 to 3,096,782 _14600 IAI46_14605: IAI46_14605 - zinc ABC transporter substrate-binding protein ZnuA, at 3,096,804 to 3,097,769 _14605 Position (kb) 3095 3096 3097Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3095.506 kb on + strandat 3095.530 kb on - strandat 3095.702 kb on + strand, within IAI46_14600at 3095.702 kb on + strand, within IAI46_14600at 3095.702 kb on + strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.705 kb on - strand, within IAI46_14600at 3095.744 kb on - strand, within IAI46_14600at 3095.966 kb on - strand, within IAI46_14600at 3095.996 kb on - strand, within IAI46_14600at 3095.999 kb on - strand, within IAI46_14600at 3096.289 kb on + strand, within IAI46_14600at 3096.290 kb on - strand, within IAI46_14600at 3096.431 kb on + strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.432 kb on - strand, within IAI46_14600at 3096.436 kb on - strand, within IAI46_14600at 3096.487 kb on + strand, within IAI46_14600at 3096.488 kb on - strand, within IAI46_14600at 3096.488 kb on - strand, within IAI46_14600at 3096.488 kb on - strand, within IAI46_14600at 3096.647 kb on + strand, within IAI46_14600at 3096.695 kb on + strandat 3096.696 kb on - strandat 3096.696 kb on - strandat 3096.696 kb on - strandat 3096.772 kb on - strandat 3096.799 kb on - strandat 3097.017 kb on + strand, within IAI46_14605at 3097.018 kb on - strand, within IAI46_14605at 3097.018 kb on - strand, within IAI46_14605at 3097.097 kb on - strand, within IAI46_14605at 3097.102 kb on + strand, within IAI46_14605at 3097.183 kb on - strand, within IAI46_14605at 3097.224 kb on - strand, within IAI46_14605at 3097.236 kb on - strand, within IAI46_14605at 3097.236 kb on - strand, within IAI46_14605at 3097.310 kb on + strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.311 kb on - strand, within IAI46_14605at 3097.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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3,095,506 + -0.6
3,095,530 - +1.9
3,095,702 + IAI46_14600 0.18 -0.1
3,095,702 + IAI46_14600 0.18 -0.6
3,095,702 + IAI46_14600 0.18 +3.8
3,095,703 - IAI46_14600 0.18 +0.9
3,095,703 - IAI46_14600 0.18 -1.9
3,095,703 - IAI46_14600 0.18 -2.6
3,095,703 - IAI46_14600 0.18 +1.0
3,095,705 - IAI46_14600 0.19 -0.9
3,095,744 - IAI46_14600 0.21 +0.9
3,095,966 - IAI46_14600 0.38 -1.1
3,095,996 - IAI46_14600 0.41 -0.6
3,095,999 - IAI46_14600 0.41 -1.5
3,096,289 + IAI46_14600 0.63 +2.9
3,096,290 - IAI46_14600 0.63 -0.6
3,096,431 + IAI46_14600 0.73 -0.1
3,096,432 - IAI46_14600 0.73 -0.1
3,096,432 - IAI46_14600 0.73 -1.5
3,096,432 - IAI46_14600 0.73 +1.9
3,096,432 - IAI46_14600 0.73 +0.8
3,096,432 - IAI46_14600 0.73 +2.4
3,096,432 - IAI46_14600 0.73 -1.5
3,096,432 - IAI46_14600 0.73 -2.1
3,096,432 - IAI46_14600 0.73 -1.5
3,096,432 - IAI46_14600 0.73 -0.9
3,096,436 - IAI46_14600 0.74 -2.1
3,096,487 + IAI46_14600 0.78 +2.4
3,096,488 - IAI46_14600 0.78 -1.2
3,096,488 - IAI46_14600 0.78 +1.9
3,096,488 - IAI46_14600 0.78 +1.1
3,096,647 + IAI46_14600 0.90 -2.1
3,096,695 + -2.1
3,096,696 - -0.6
3,096,696 - +1.8
3,096,696 - +0.9
3,096,772 - +0.6
3,096,799 - +0.6
3,097,017 + IAI46_14605 0.22 +0.9
3,097,018 - IAI46_14605 0.22 -0.6
3,097,018 - IAI46_14605 0.22 -1.6
3,097,097 - IAI46_14605 0.30 +1.5
3,097,102 + IAI46_14605 0.31 -1.9
3,097,183 - IAI46_14605 0.39 +1.0
3,097,224 - IAI46_14605 0.43 -0.6
3,097,236 - IAI46_14605 0.45 +0.3
3,097,236 - IAI46_14605 0.45 +0.6
3,097,310 + IAI46_14605 0.52 -1.8
3,097,311 - IAI46_14605 0.52 +1.5
3,097,311 - IAI46_14605 0.52 -1.5
3,097,311 - IAI46_14605 0.52 +0.6
3,097,311 - IAI46_14605 0.52 -2.2
3,097,771 - -0.4

Or see this region's nucleotide sequence