Strain Fitness in Serratia liquefaciens MT49 around IAI46_13715

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13705 and IAI46_13710 are separated by 1 nucleotidesIAI46_13710 and IAI46_13715 are separated by 265 nucleotidesIAI46_13715 and IAI46_13720 overlap by 4 nucleotidesIAI46_13720 and IAI46_13725 overlap by 4 nucleotides IAI46_13705: IAI46_13705 - lysozyme, at 2,922,815 to 2,923,345 _13705 IAI46_13710: IAI46_13710 - hypothetical protein, at 2,923,347 to 2,923,643 _13710 IAI46_13715: IAI46_13715 - antitermination protein, at 2,923,909 to 2,924,742 _13715 IAI46_13720: IAI46_13720 - hypothetical protein, at 2,924,739 to 2,924,933 _13720 IAI46_13725: IAI46_13725 - DUF968 domain-containing protein, at 2,924,930 to 2,925,904 _13725 Position (kb) 2923 2924 2925Strain fitness (log2 ratio) -2 -1 0 1 2at 2923.208 kb on - strand, within IAI46_13705at 2923.224 kb on + strand, within IAI46_13705at 2923.224 kb on + strand, within IAI46_13705at 2923.229 kb on + strand, within IAI46_13705at 2923.232 kb on - strand, within IAI46_13705at 2923.298 kb on + strandat 2923.416 kb on - strand, within IAI46_13710at 2923.436 kb on - strand, within IAI46_13710at 2923.436 kb on - strand, within IAI46_13710at 2923.504 kb on + strand, within IAI46_13710at 2923.507 kb on + strand, within IAI46_13710at 2923.507 kb on + strand, within IAI46_13710at 2923.546 kb on - strand, within IAI46_13710at 2923.554 kb on + strand, within IAI46_13710at 2923.555 kb on - strand, within IAI46_13710at 2923.555 kb on - strand, within IAI46_13710at 2923.555 kb on - strand, within IAI46_13710at 2923.555 kb on - strand, within IAI46_13710at 2923.559 kb on - strand, within IAI46_13710at 2923.704 kb on - strandat 2923.983 kb on - strandat 2924.146 kb on - strand, within IAI46_13715at 2924.158 kb on - strand, within IAI46_13715at 2924.243 kb on - strand, within IAI46_13715at 2924.310 kb on + strand, within IAI46_13715at 2924.365 kb on + strand, within IAI46_13715at 2924.470 kb on + strand, within IAI46_13715at 2924.552 kb on - strand, within IAI46_13715at 2924.596 kb on + strand, within IAI46_13715at 2924.625 kb on + strand, within IAI46_13715at 2924.734 kb on + strandat 2925.221 kb on - strand, within IAI46_13725at 2925.286 kb on + strand, within IAI46_13725at 2925.529 kb on + strand, within IAI46_13725at 2925.530 kb on - strand, within IAI46_13725at 2925.530 kb on - strand, within IAI46_13725at 2925.565 kb on + strand, within IAI46_13725at 2925.605 kb on - strand, within IAI46_13725at 2925.605 kb on - strand, within IAI46_13725at 2925.628 kb on - strand, within IAI46_13725at 2925.628 kb on - strand, within IAI46_13725at 2925.673 kb on + strand, within IAI46_13725

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,923,208 - IAI46_13705 0.74 +1.2
2,923,224 + IAI46_13705 0.77 -0.6
2,923,224 + IAI46_13705 0.77 -0.9
2,923,229 + IAI46_13705 0.78 -0.9
2,923,232 - IAI46_13705 0.79 +0.9
2,923,298 + -1.4
2,923,416 - IAI46_13710 0.23 -1.9
2,923,436 - IAI46_13710 0.30 -1.4
2,923,436 - IAI46_13710 0.30 -2.3
2,923,504 + IAI46_13710 0.53 +1.1
2,923,507 + IAI46_13710 0.54 +1.8
2,923,507 + IAI46_13710 0.54 -0.7
2,923,546 - IAI46_13710 0.67 +0.6
2,923,554 + IAI46_13710 0.70 +0.1
2,923,555 - IAI46_13710 0.70 -0.1
2,923,555 - IAI46_13710 0.70 +2.5
2,923,555 - IAI46_13710 0.70 +1.9
2,923,555 - IAI46_13710 0.70 +1.9
2,923,559 - IAI46_13710 0.71 +1.5
2,923,704 - +0.1
2,923,983 - +1.8
2,924,146 - IAI46_13715 0.28 -0.5
2,924,158 - IAI46_13715 0.30 -2.4
2,924,243 - IAI46_13715 0.40 +1.6
2,924,310 + IAI46_13715 0.48 -0.9
2,924,365 + IAI46_13715 0.55 -1.4
2,924,470 + IAI46_13715 0.67 +1.1
2,924,552 - IAI46_13715 0.77 -0.7
2,924,596 + IAI46_13715 0.82 -2.0
2,924,625 + IAI46_13715 0.86 +0.7
2,924,734 + -0.6
2,925,221 - IAI46_13725 0.30 +1.9
2,925,286 + IAI46_13725 0.37 -1.1
2,925,529 + IAI46_13725 0.61 +0.3
2,925,530 - IAI46_13725 0.62 +0.4
2,925,530 - IAI46_13725 0.62 +2.7
2,925,565 + IAI46_13725 0.65 +0.2
2,925,605 - IAI46_13725 0.69 -0.4
2,925,605 - IAI46_13725 0.69 +1.0
2,925,628 - IAI46_13725 0.72 -1.8
2,925,628 - IAI46_13725 0.72 -0.7
2,925,673 + IAI46_13725 0.76 +0.6

Or see this region's nucleotide sequence