Strain Fitness in Serratia liquefaciens MT49 around IAI46_12615

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12610 and IAI46_12615 are separated by 577 nucleotidesIAI46_12615 and IAI46_12620 are separated by 520 nucleotidesIAI46_12620 and IAI46_12625 are separated by 71 nucleotides IAI46_12610: IAI46_12610 - alpha/beta hydrolase, at 2,678,642 to 2,679,472 _12610 IAI46_12615: IAI46_12615 - hypothetical protein, at 2,680,050 to 2,680,562 _12615 IAI46_12620: IAI46_12620 - MerR family transcriptional regulator, at 2,681,083 to 2,681,481 _12620 IAI46_12625: IAI46_12625 - NADH:flavin oxidoreductase/NADH oxidase family protein, at 2,681,553 to 2,682,776 _12625 Position (kb) 2680 2681Strain fitness (log2 ratio) -2 -1 0 1 2at 2679.113 kb on + strand, within IAI46_12610at 2679.231 kb on - strand, within IAI46_12610at 2679.533 kb on + strandat 2679.792 kb on - strandat 2679.935 kb on + strandat 2679.935 kb on + strandat 2680.253 kb on + strand, within IAI46_12615at 2680.326 kb on + strand, within IAI46_12615at 2680.481 kb on + strand, within IAI46_12615at 2680.486 kb on - strand, within IAI46_12615at 2680.513 kb on + strandat 2680.686 kb on - strandat 2680.721 kb on - strandat 2681.128 kb on + strand, within IAI46_12620at 2681.299 kb on - strand, within IAI46_12620at 2681.401 kb on - strand, within IAI46_12620at 2681.432 kb on - strand, within IAI46_12620at 2681.432 kb on - strand, within IAI46_12620at 2681.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,679,113 + IAI46_12610 0.57 -1.0
2,679,231 - IAI46_12610 0.71 -1.5
2,679,533 + +0.8
2,679,792 - +0.1
2,679,935 + -1.2
2,679,935 + +1.0
2,680,253 + IAI46_12615 0.40 -0.8
2,680,326 + IAI46_12615 0.54 -0.8
2,680,481 + IAI46_12615 0.84 +1.5
2,680,486 - IAI46_12615 0.85 -2.7
2,680,513 + +2.1
2,680,686 - -1.0
2,680,721 - -2.4
2,681,128 + IAI46_12620 0.11 -1.8
2,681,299 - IAI46_12620 0.54 +2.7
2,681,401 - IAI46_12620 0.80 +2.1
2,681,432 - IAI46_12620 0.87 +0.8
2,681,432 - IAI46_12620 0.87 +0.9
2,681,513 - -1.5

Or see this region's nucleotide sequence