Strain Fitness in Serratia liquefaciens MT49 around IAI46_12355

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12350 and IAI46_12355 are separated by 65 nucleotidesIAI46_12355 and IAI46_12360 are separated by 132 nucleotides IAI46_12350: IAI46_12350 - zinc-binding dehydrogenase, at 2,623,371 to 2,624,357 _12350 IAI46_12355: IAI46_12355 - endonuclease/exonuclease/phosphatase family protein, at 2,624,423 to 2,625,325 _12355 IAI46_12360: IAI46_12360 - LysR family transcriptional regulator, at 2,625,458 to 2,626,378 _12360 Position (kb) 2624 2625 2626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2623.659 kb on + strand, within IAI46_12350at 2623.660 kb on - strand, within IAI46_12350at 2623.752 kb on + strand, within IAI46_12350at 2623.753 kb on - strand, within IAI46_12350at 2623.784 kb on - strand, within IAI46_12350at 2623.795 kb on + strand, within IAI46_12350at 2623.908 kb on - strand, within IAI46_12350at 2624.086 kb on + strand, within IAI46_12350at 2624.086 kb on + strand, within IAI46_12350at 2624.239 kb on + strand, within IAI46_12350at 2624.424 kb on + strandat 2624.501 kb on - strandat 2624.501 kb on - strandat 2624.555 kb on - strand, within IAI46_12355at 2624.561 kb on + strand, within IAI46_12355at 2624.561 kb on + strand, within IAI46_12355at 2624.561 kb on + strand, within IAI46_12355at 2624.562 kb on - strand, within IAI46_12355at 2624.639 kb on + strand, within IAI46_12355at 2624.777 kb on + strand, within IAI46_12355at 2624.778 kb on - strand, within IAI46_12355at 2624.943 kb on - strand, within IAI46_12355at 2624.950 kb on - strand, within IAI46_12355at 2624.950 kb on - strand, within IAI46_12355at 2624.989 kb on - strand, within IAI46_12355at 2625.019 kb on + strand, within IAI46_12355at 2625.052 kb on + strand, within IAI46_12355at 2625.053 kb on - strand, within IAI46_12355at 2625.053 kb on - strand, within IAI46_12355at 2625.053 kb on - strand, within IAI46_12355at 2625.161 kb on - strand, within IAI46_12355at 2625.162 kb on + strand, within IAI46_12355at 2625.310 kb on + strandat 2625.311 kb on - strandat 2625.468 kb on - strandat 2625.468 kb on - strandat 2625.603 kb on + strand, within IAI46_12360at 2625.810 kb on + strand, within IAI46_12360at 2625.811 kb on - strand, within IAI46_12360at 2625.811 kb on - strand, within IAI46_12360at 2625.916 kb on + strand, within IAI46_12360at 2626.084 kb on + strand, within IAI46_12360at 2626.207 kb on + strand, within IAI46_12360at 2626.208 kb on - strand, within IAI46_12360

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,623,659 + IAI46_12350 0.29 -0.6
2,623,660 - IAI46_12350 0.29 +1.3
2,623,752 + IAI46_12350 0.39 -0.3
2,623,753 - IAI46_12350 0.39 +0.2
2,623,784 - IAI46_12350 0.42 -1.5
2,623,795 + IAI46_12350 0.43 -1.5
2,623,908 - IAI46_12350 0.54 -0.5
2,624,086 + IAI46_12350 0.72 +0.2
2,624,086 + IAI46_12350 0.72 -1.0
2,624,239 + IAI46_12350 0.88 +1.0
2,624,424 + -0.8
2,624,501 - -1.6
2,624,501 - +1.6
2,624,555 - IAI46_12355 0.15 -2.8
2,624,561 + IAI46_12355 0.15 -1.5
2,624,561 + IAI46_12355 0.15 +0.9
2,624,561 + IAI46_12355 0.15 -2.3
2,624,562 - IAI46_12355 0.15 -2.2
2,624,639 + IAI46_12355 0.24 -1.6
2,624,777 + IAI46_12355 0.39 +2.9
2,624,778 - IAI46_12355 0.39 -1.8
2,624,943 - IAI46_12355 0.58 +1.1
2,624,950 - IAI46_12355 0.58 +1.8
2,624,950 - IAI46_12355 0.58 +2.5
2,624,989 - IAI46_12355 0.63 +1.6
2,625,019 + IAI46_12355 0.66 -0.5
2,625,052 + IAI46_12355 0.70 -2.6
2,625,053 - IAI46_12355 0.70 +2.4
2,625,053 - IAI46_12355 0.70 +0.5
2,625,053 - IAI46_12355 0.70 +0.6
2,625,161 - IAI46_12355 0.82 +1.8
2,625,162 + IAI46_12355 0.82 -0.2
2,625,310 + +4.5
2,625,311 - -2.2
2,625,468 - +0.6
2,625,468 - +2.0
2,625,603 + IAI46_12360 0.16 +0.5
2,625,810 + IAI46_12360 0.38 +1.5
2,625,811 - IAI46_12360 0.38 +0.8
2,625,811 - IAI46_12360 0.38 -0.2
2,625,916 + IAI46_12360 0.50 +0.8
2,626,084 + IAI46_12360 0.68 +0.4
2,626,207 + IAI46_12360 0.81 +1.6
2,626,208 - IAI46_12360 0.81 +1.1

Or see this region's nucleotide sequence