Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12350 and IAI46_12355 are separated by 65 nucleotides IAI46_12355 and IAI46_12360 are separated by 132 nucleotides
IAI46_12350: IAI46_12350 - zinc-binding dehydrogenase, at 2,623,371 to 2,624,357
_12350
IAI46_12355: IAI46_12355 - endonuclease/exonuclease/phosphatase family protein, at 2,624,423 to 2,625,325
_12355
IAI46_12360: IAI46_12360 - LysR family transcriptional regulator, at 2,625,458 to 2,626,378
_12360
Position (kb)
2624
2625
2626 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2623.659 kb on + strand, within IAI46_12350 at 2623.660 kb on - strand, within IAI46_12350 at 2623.752 kb on + strand, within IAI46_12350 at 2623.753 kb on - strand, within IAI46_12350 at 2623.784 kb on - strand, within IAI46_12350 at 2623.795 kb on + strand, within IAI46_12350 at 2623.908 kb on - strand, within IAI46_12350 at 2624.086 kb on + strand, within IAI46_12350 at 2624.086 kb on + strand, within IAI46_12350 at 2624.239 kb on + strand, within IAI46_12350 at 2624.424 kb on + strand at 2624.501 kb on - strand at 2624.501 kb on - strand at 2624.555 kb on - strand, within IAI46_12355 at 2624.561 kb on + strand, within IAI46_12355 at 2624.561 kb on + strand, within IAI46_12355 at 2624.561 kb on + strand, within IAI46_12355 at 2624.562 kb on - strand, within IAI46_12355 at 2624.639 kb on + strand, within IAI46_12355 at 2624.777 kb on + strand, within IAI46_12355 at 2624.778 kb on - strand, within IAI46_12355 at 2624.943 kb on - strand, within IAI46_12355 at 2624.950 kb on - strand, within IAI46_12355 at 2624.950 kb on - strand, within IAI46_12355 at 2624.989 kb on - strand, within IAI46_12355 at 2625.019 kb on + strand, within IAI46_12355 at 2625.052 kb on + strand, within IAI46_12355 at 2625.053 kb on - strand, within IAI46_12355 at 2625.053 kb on - strand, within IAI46_12355 at 2625.053 kb on - strand, within IAI46_12355 at 2625.161 kb on - strand, within IAI46_12355 at 2625.162 kb on + strand, within IAI46_12355 at 2625.310 kb on + strand at 2625.311 kb on - strand at 2625.468 kb on - strand at 2625.468 kb on - strand at 2625.603 kb on + strand, within IAI46_12360 at 2625.810 kb on + strand, within IAI46_12360 at 2625.811 kb on - strand, within IAI46_12360 at 2625.811 kb on - strand, within IAI46_12360 at 2625.916 kb on + strand, within IAI46_12360 at 2626.084 kb on + strand, within IAI46_12360 at 2626.207 kb on + strand, within IAI46_12360 at 2626.208 kb on - strand, within IAI46_12360
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 2,623,659 + IAI46_12350 0.29 -0.6 2,623,660 - IAI46_12350 0.29 +1.3 2,623,752 + IAI46_12350 0.39 -0.3 2,623,753 - IAI46_12350 0.39 +0.2 2,623,784 - IAI46_12350 0.42 -1.5 2,623,795 + IAI46_12350 0.43 -1.5 2,623,908 - IAI46_12350 0.54 -0.5 2,624,086 + IAI46_12350 0.72 +0.2 2,624,086 + IAI46_12350 0.72 -1.0 2,624,239 + IAI46_12350 0.88 +1.0 2,624,424 + -0.8 2,624,501 - -1.6 2,624,501 - +1.6 2,624,555 - IAI46_12355 0.15 -2.8 2,624,561 + IAI46_12355 0.15 -1.5 2,624,561 + IAI46_12355 0.15 +0.9 2,624,561 + IAI46_12355 0.15 -2.3 2,624,562 - IAI46_12355 0.15 -2.2 2,624,639 + IAI46_12355 0.24 -1.6 2,624,777 + IAI46_12355 0.39 +2.9 2,624,778 - IAI46_12355 0.39 -1.8 2,624,943 - IAI46_12355 0.58 +1.1 2,624,950 - IAI46_12355 0.58 +1.8 2,624,950 - IAI46_12355 0.58 +2.5 2,624,989 - IAI46_12355 0.63 +1.6 2,625,019 + IAI46_12355 0.66 -0.5 2,625,052 + IAI46_12355 0.70 -2.6 2,625,053 - IAI46_12355 0.70 +2.4 2,625,053 - IAI46_12355 0.70 +0.5 2,625,053 - IAI46_12355 0.70 +0.6 2,625,161 - IAI46_12355 0.82 +1.8 2,625,162 + IAI46_12355 0.82 -0.2 2,625,310 + +4.5 2,625,311 - -2.2 2,625,468 - +0.6 2,625,468 - +2.0 2,625,603 + IAI46_12360 0.16 +0.5 2,625,810 + IAI46_12360 0.38 +1.5 2,625,811 - IAI46_12360 0.38 +0.8 2,625,811 - IAI46_12360 0.38 -0.2 2,625,916 + IAI46_12360 0.50 +0.8 2,626,084 + IAI46_12360 0.68 +0.4 2,626,207 + IAI46_12360 0.81 +1.6 2,626,208 - IAI46_12360 0.81 +1.1
Or see this region's nucleotide sequence