Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_09210 and IAI46_09215 are separated by 58 nucleotides IAI46_09215 and IAI46_09220 are separated by 145 nucleotides IAI46_09220 and IAI46_09225 are separated by 58 nucleotides IAI46_09225 and IAI46_09230 are separated by 10 nucleotides IAI46_09230 and IAI46_09235 are separated by 659 nucleotides
IAI46_09210: IAI46_09210 - excinuclease ABC subunit UvrC, at 1,971,838 to 1,973,670
_09210
IAI46_09215: IAI46_09215 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,973,729 to 1,974,277
_09215
IAI46_09220: IAI46_09220 - tRNA-Gly, at 1,974,423 to 1,974,498
_09220
IAI46_09225: IAI46_09225 - tRNA-Cys, at 1,974,557 to 1,974,630
_09225
IAI46_09230: IAI46_09230 - tRNA-Leu, at 1,974,641 to 1,974,726
_09230
IAI46_09235: IAI46_09235 - hypothetical protein, at 1,975,386 to 1,975,616
_09235
Position (kb)
1974
1975 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1973.560 kb on + strand at 1973.561 kb on - strand at 1973.562 kb on + strand at 1973.563 kb on - strand at 1973.582 kb on + strand at 1973.687 kb on + strand at 1973.713 kb on + strand at 1973.714 kb on - strand at 1973.717 kb on + strand at 1973.728 kb on + strand at 1974.887 kb on + strand at 1974.888 kb on - strand at 1974.949 kb on - strand at 1974.957 kb on + strand at 1974.975 kb on + strand at 1974.975 kb on + strand at 1974.975 kb on + strand at 1974.979 kb on + strand at 1974.979 kb on + strand at 1975.029 kb on + strand at 1975.029 kb on + strand at 1975.030 kb on - strand at 1975.148 kb on + strand at 1975.477 kb on + strand, within IAI46_09235 at 1975.553 kb on - strand, within IAI46_09235 at 1975.554 kb on + strand, within IAI46_09235 at 1975.555 kb on - strand, within IAI46_09235 at 1975.568 kb on - strand, within IAI46_09235 at 1975.584 kb on - strand, within IAI46_09235 at 1975.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 1,973,560 + -0.5 1,973,561 - -1.7 1,973,562 + +0.0 1,973,563 - +3.9 1,973,582 + +0.1 1,973,687 + +1.8 1,973,713 + +0.2 1,973,714 - -0.3 1,973,717 + -1.8 1,973,728 + -0.7 1,974,887 + +0.4 1,974,888 - -1.2 1,974,949 - -0.1 1,974,957 + -0.5 1,974,975 + +2.2 1,974,975 + -2.6 1,974,975 + +1.4 1,974,979 + -0.1 1,974,979 + +1.6 1,975,029 + -3.1 1,975,029 + -2.1 1,975,030 - -2.3 1,975,148 + +0.4 1,975,477 + IAI46_09235 0.39 +0.8 1,975,553 - IAI46_09235 0.72 -1.2 1,975,554 + IAI46_09235 0.73 -0.5 1,975,555 - IAI46_09235 0.73 +0.1 1,975,568 - IAI46_09235 0.79 +0.7 1,975,584 - IAI46_09235 0.86 -0.9 1,975,607 - +0.9
Or see this region's nucleotide sequence