Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_09165 and IAI46_09170 overlap by 4 nucleotides IAI46_09170 and IAI46_09175 overlap by 8 nucleotides IAI46_09175 and IAI46_09180 are separated by 254 nucleotides
IAI46_09165: IAI46_09165 - FAD-dependent oxidoreductase, at 1,965,033 to 1,966,157
_09165
IAI46_09170: IAI46_09170 - (2Fe-2S)-binding protein, at 1,966,154 to 1,966,414
_09170
IAI46_09175: IAI46_09175 - NAD(P)/FAD-dependent oxidoreductase, at 1,966,407 to 1,967,669
_09175
IAI46_09180: IAI46_09180 - hypothetical protein, at 1,967,924 to 1,968,280
_09180
Position (kb) 1966
1967
1968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1965.416 kb on + strand, within IAI46_09165 at 1965.421 kb on + strand, within IAI46_09165 at 1965.422 kb on - strand, within IAI46_09165 at 1965.471 kb on + strand, within IAI46_09165 at 1965.472 kb on - strand, within IAI46_09165 at 1966.148 kb on - strand at 1966.154 kb on - strand at 1966.514 kb on + strand at 1966.705 kb on - strand, within IAI46_09175 at 1966.705 kb on - strand, within IAI46_09175 at 1966.745 kb on - strand, within IAI46_09175 at 1967.308 kb on - strand, within IAI46_09175 at 1967.605 kb on + strand at 1967.606 kb on - strand at 1967.759 kb on - strand at 1967.834 kb on + strand at 1967.916 kb on + strand at 1967.916 kb on + strand at 1967.916 kb on + strand at 1967.917 kb on - strand at 1967.917 kb on - strand at 1967.919 kb on + strand at 1967.937 kb on + strand at 1967.938 kb on - strand at 1967.940 kb on + strand at 1967.963 kb on - strand, within IAI46_09180 at 1967.968 kb on - strand, within IAI46_09180 at 1967.968 kb on - strand, within IAI46_09180 at 1967.968 kb on - strand, within IAI46_09180 at 1967.968 kb on - strand, within IAI46_09180 at 1967.981 kb on + strand, within IAI46_09180 at 1967.981 kb on + strand, within IAI46_09180 at 1968.109 kb on - strand, within IAI46_09180 at 1968.113 kb on - strand, within IAI46_09180 at 1968.154 kb on - strand, within IAI46_09180 at 1968.178 kb on - strand, within IAI46_09180 at 1968.178 kb on - strand, within IAI46_09180 at 1968.181 kb on - strand, within IAI46_09180 at 1968.256 kb on + strand at 1968.283 kb on + strand at 1968.284 kb on - strand at 1968.290 kb on - strand at 1968.321 kb on - strand at 1968.342 kb on - strand at 1968.355 kb on - strand at 1968.358 kb on - strand at 1968.358 kb on - strand at 1968.412 kb on + strand at 1968.413 kb on - strand at 1968.413 kb on - strand at 1968.415 kb on + strand at 1968.432 kb on + strand at 1968.502 kb on - strand at 1968.502 kb on - strand at 1968.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 1,965,416 + IAI46_09165 0.34 +0.9 1,965,421 + IAI46_09165 0.34 +1.2 1,965,422 - IAI46_09165 0.35 -1.4 1,965,471 + IAI46_09165 0.39 +2.1 1,965,472 - IAI46_09165 0.39 -0.1 1,966,148 - -0.4 1,966,154 - +1.0 1,966,514 + -0.5 1,966,705 - IAI46_09175 0.24 -0.9 1,966,705 - IAI46_09175 0.24 +1.8 1,966,745 - IAI46_09175 0.27 +1.0 1,967,308 - IAI46_09175 0.71 -2.2 1,967,605 + +0.8 1,967,606 - +1.6 1,967,759 - +0.3 1,967,834 + +1.2 1,967,916 + +1.0 1,967,916 + +0.7 1,967,916 + +0.6 1,967,917 - +1.2 1,967,917 - +1.2 1,967,919 + -0.9 1,967,937 + -3.4 1,967,938 - +0.9 1,967,940 + +1.3 1,967,963 - IAI46_09180 0.11 +1.7 1,967,968 - IAI46_09180 0.12 +0.4 1,967,968 - IAI46_09180 0.12 +0.8 1,967,968 - IAI46_09180 0.12 +1.6 1,967,968 - IAI46_09180 0.12 -1.0 1,967,981 + IAI46_09180 0.16 +2.1 1,967,981 + IAI46_09180 0.16 +0.1 1,968,109 - IAI46_09180 0.52 -0.9 1,968,113 - IAI46_09180 0.53 +0.1 1,968,154 - IAI46_09180 0.64 +0.3 1,968,178 - IAI46_09180 0.71 +1.0 1,968,178 - IAI46_09180 0.71 +0.8 1,968,181 - IAI46_09180 0.72 +2.6 1,968,256 + +0.6 1,968,283 + -2.0 1,968,284 - +0.1 1,968,290 - +2.1 1,968,321 - -2.5 1,968,342 - +1.3 1,968,355 - +1.2 1,968,358 - -0.7 1,968,358 - -0.8 1,968,412 + -2.6 1,968,413 - +1.0 1,968,413 - -2.2 1,968,415 + -2.0 1,968,432 + -0.5 1,968,502 - +1.1 1,968,502 - +1.4 1,968,504 - -0.2
Or see this region's nucleotide sequence