Strain Fitness in Serratia liquefaciens MT49 around IAI46_04085

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04080 and IAI46_04085 overlap by 1 nucleotidesIAI46_04085 and IAI46_04090 overlap by 1 nucleotides IAI46_04080: IAI46_04080 - MMPL family transporter, at 879,276 to 881,582 _04080 IAI46_04085: IAI46_04085 - DUF3261 domain-containing protein, at 881,582 to 882,154 _04085 IAI46_04090: IAI46_04090 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 882,154 to 883,323 _04090 Position (kb) 881 882 883Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 880.613 kb on - strand, within IAI46_04080at 880.642 kb on + strand, within IAI46_04080at 880.642 kb on + strand, within IAI46_04080at 880.642 kb on + strand, within IAI46_04080at 880.642 kb on + strand, within IAI46_04080at 880.654 kb on + strand, within IAI46_04080at 880.674 kb on - strand, within IAI46_04080at 880.697 kb on + strand, within IAI46_04080at 880.697 kb on + strand, within IAI46_04080at 880.698 kb on - strand, within IAI46_04080at 880.722 kb on + strand, within IAI46_04080at 880.754 kb on + strand, within IAI46_04080at 880.864 kb on + strand, within IAI46_04080at 880.865 kb on - strand, within IAI46_04080at 880.865 kb on - strand, within IAI46_04080at 880.925 kb on + strand, within IAI46_04080at 880.925 kb on + strand, within IAI46_04080at 880.925 kb on + strand, within IAI46_04080at 881.161 kb on - strand, within IAI46_04080at 881.170 kb on - strand, within IAI46_04080at 881.209 kb on - strand, within IAI46_04080at 881.260 kb on + strand, within IAI46_04080at 881.261 kb on - strand, within IAI46_04080at 881.360 kb on + strandat 881.364 kb on + strandat 881.364 kb on + strandat 881.365 kb on - strandat 881.365 kb on - strandat 881.365 kb on - strandat 881.365 kb on - strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.424 kb on - strandat 881.431 kb on + strandat 881.432 kb on - strandat 881.503 kb on + strandat 881.552 kb on - strandat 881.592 kb on + strandat 881.592 kb on + strandat 881.593 kb on - strandat 881.607 kb on + strandat 881.607 kb on + strandat 881.697 kb on + strand, within IAI46_04085at 881.725 kb on + strand, within IAI46_04085at 881.858 kb on + strand, within IAI46_04085at 881.859 kb on - strand, within IAI46_04085at 881.935 kb on + strand, within IAI46_04085at 881.948 kb on + strand, within IAI46_04085at 881.949 kb on - strand, within IAI46_04085at 882.015 kb on + strand, within IAI46_04085at 882.027 kb on - strand, within IAI46_04085at 882.134 kb on - strandat 882.152 kb on + strandat 882.161 kb on - strandat 882.302 kb on + strand, within IAI46_04090at 882.302 kb on + strand, within IAI46_04090at 882.303 kb on - strand, within IAI46_04090at 882.303 kb on - strand, within IAI46_04090at 882.314 kb on + strand, within IAI46_04090at 882.346 kb on - strand, within IAI46_04090at 882.357 kb on + strand, within IAI46_04090at 882.358 kb on - strand, within IAI46_04090at 882.358 kb on - strand, within IAI46_04090at 882.447 kb on + strand, within IAI46_04090at 882.448 kb on - strand, within IAI46_04090at 882.499 kb on + strand, within IAI46_04090at 882.533 kb on - strand, within IAI46_04090at 882.533 kb on - strand, within IAI46_04090at 882.601 kb on + strand, within IAI46_04090at 882.602 kb on - strand, within IAI46_04090at 882.602 kb on - strand, within IAI46_04090at 882.652 kb on - strand, within IAI46_04090at 882.798 kb on + strand, within IAI46_04090at 882.798 kb on + strand, within IAI46_04090at 882.798 kb on + strand, within IAI46_04090at 882.982 kb on + strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 883.090 kb on - strand, within IAI46_04090

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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880,613 - IAI46_04080 0.58 -2.3
880,642 + IAI46_04080 0.59 +0.7
880,642 + IAI46_04080 0.59 +0.6
880,642 + IAI46_04080 0.59 +0.3
880,642 + IAI46_04080 0.59 -0.4
880,654 + IAI46_04080 0.60 +0.5
880,674 - IAI46_04080 0.61 +1.8
880,697 + IAI46_04080 0.62 +0.6
880,697 + IAI46_04080 0.62 -1.9
880,698 - IAI46_04080 0.62 +0.1
880,722 + IAI46_04080 0.63 +0.6
880,754 + IAI46_04080 0.64 -2.4
880,864 + IAI46_04080 0.69 +0.5
880,865 - IAI46_04080 0.69 -0.7
880,865 - IAI46_04080 0.69 +1.1
880,925 + IAI46_04080 0.71 +0.9
880,925 + IAI46_04080 0.71 +0.1
880,925 + IAI46_04080 0.71 -2.4
881,161 - IAI46_04080 0.82 -2.1
881,170 - IAI46_04080 0.82 -1.8
881,209 - IAI46_04080 0.84 -1.2
881,260 + IAI46_04080 0.86 -2.2
881,261 - IAI46_04080 0.86 -0.9
881,360 + +0.1
881,364 + +0.2
881,364 + +0.5
881,365 - -0.5
881,365 - -2.6
881,365 - -0.9
881,365 - -0.4
881,366 + +1.6
881,366 + -0.0
881,366 + +1.1
881,366 + +1.2
881,366 + -2.0
881,367 - -0.7
881,367 - -0.4
881,367 - +2.3
881,424 - +0.4
881,431 + +2.0
881,432 - -1.5
881,503 + -0.7
881,552 - +0.7
881,592 + -1.6
881,592 + -2.2
881,593 - -0.2
881,607 + -1.3
881,607 + +0.7
881,697 + IAI46_04085 0.20 +0.1
881,725 + IAI46_04085 0.25 +0.3
881,858 + IAI46_04085 0.48 +0.0
881,859 - IAI46_04085 0.48 +0.2
881,935 + IAI46_04085 0.62 -1.7
881,948 + IAI46_04085 0.64 -0.6
881,949 - IAI46_04085 0.64 +4.1
882,015 + IAI46_04085 0.76 +0.1
882,027 - IAI46_04085 0.78 -0.5
882,134 - -1.9
882,152 + +0.7
882,161 - -0.5
882,302 + IAI46_04090 0.13 +1.3
882,302 + IAI46_04090 0.13 +1.9
882,303 - IAI46_04090 0.13 -2.3
882,303 - IAI46_04090 0.13 -2.3
882,314 + IAI46_04090 0.14 +0.8
882,346 - IAI46_04090 0.16 -2.0
882,357 + IAI46_04090 0.17 +1.5
882,358 - IAI46_04090 0.17 -2.7
882,358 - IAI46_04090 0.17 +0.5
882,447 + IAI46_04090 0.25 -1.2
882,448 - IAI46_04090 0.25 +0.7
882,499 + IAI46_04090 0.29 +1.7
882,533 - IAI46_04090 0.32 -1.0
882,533 - IAI46_04090 0.32 +0.5
882,601 + IAI46_04090 0.38 -1.1
882,602 - IAI46_04090 0.38 -1.6
882,602 - IAI46_04090 0.38 -1.8
882,652 - IAI46_04090 0.43 -1.8
882,798 + IAI46_04090 0.55 +0.2
882,798 + IAI46_04090 0.55 -2.2
882,798 + IAI46_04090 0.55 +1.2
882,982 + IAI46_04090 0.71 +1.7
882,983 - IAI46_04090 0.71 -0.5
882,983 - IAI46_04090 0.71 -1.7
882,983 - IAI46_04090 0.71 +0.1
882,983 - IAI46_04090 0.71 -3.1
883,090 - IAI46_04090 0.80 +0.8

Or see this region's nucleotide sequence