Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04010 and IAI46_04015 are separated by 82 nucleotides IAI46_04015 and IAI46_04020 are separated by 95 nucleotides IAI46_04020 and IAI46_04025 are separated by 188 nucleotides IAI46_04025 and IAI46_04030 are separated by 284 nucleotides
IAI46_04010: IAI46_04010 - 23S ribosomal RNA, at 868,037 to 870,974
_04010
IAI46_04015: IAI46_04015 - 5S ribosomal RNA, at 871,057 to 871,172
_04015
IAI46_04020: IAI46_04020 - tRNA-Asp, at 871,268 to 871,344
_04020
IAI46_04025: IAI46_04025 - hypothetical protein, at 871,533 to 871,922
_04025
IAI46_04030: IAI46_04030 - beta-ketoacyl synthase chain length factor, at 872,207 to 872,929
_04030
Position (kb) 871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 870.953 kb on + strand at 870.972 kb on + strand at 871.347 kb on + strand at 871.367 kb on + strand at 871.387 kb on + strand at 871.452 kb on + strand at 871.456 kb on + strand at 871.635 kb on - strand, within IAI46_04025 at 871.638 kb on - strand, within IAI46_04025 at 871.649 kb on + strand, within IAI46_04025 at 871.651 kb on + strand, within IAI46_04025 at 871.808 kb on + strand, within IAI46_04025 at 871.808 kb on + strand, within IAI46_04025 at 871.809 kb on - strand, within IAI46_04025 at 871.809 kb on - strand, within IAI46_04025 at 871.922 kb on + strand at 871.961 kb on - strand at 871.966 kb on + strand at 871.967 kb on - strand at 871.978 kb on + strand at 871.979 kb on - strand at 871.982 kb on + strand at 871.982 kb on + strand at 871.983 kb on - strand at 871.988 kb on + strand at 872.029 kb on - strand at 872.049 kb on + strand at 872.049 kb on + strand at 872.093 kb on - strand at 872.158 kb on - strand at 872.162 kb on - strand at 872.162 kb on - strand at 872.163 kb on + strand at 872.225 kb on - strand at 872.225 kb on - strand at 872.225 kb on - strand at 872.225 kb on - strand at 872.227 kb on - strand at 872.391 kb on + strand, within IAI46_04030 at 872.391 kb on + strand, within IAI46_04030 at 872.391 kb on + strand, within IAI46_04030 at 872.392 kb on - strand, within IAI46_04030 at 872.431 kb on + strand, within IAI46_04030 at 872.542 kb on + strand, within IAI46_04030 at 872.542 kb on + strand, within IAI46_04030 at 872.569 kb on + strand, within IAI46_04030 at 872.569 kb on + strand, within IAI46_04030 at 872.570 kb on - strand, within IAI46_04030 at 872.655 kb on + strand, within IAI46_04030 at 872.655 kb on + strand, within IAI46_04030 at 872.656 kb on - strand, within IAI46_04030 at 872.656 kb on - strand, within IAI46_04030 at 872.656 kb on - strand, within IAI46_04030 at 872.656 kb on - strand, within IAI46_04030 at 872.656 kb on - strand, within IAI46_04030 at 872.656 kb on - strand, within IAI46_04030 at 872.659 kb on + strand, within IAI46_04030 at 872.683 kb on - strand, within IAI46_04030 at 872.683 kb on - strand, within IAI46_04030 at 872.685 kb on + strand, within IAI46_04030 at 872.685 kb on + strand, within IAI46_04030 at 872.686 kb on - strand, within IAI46_04030 at 872.717 kb on + strand, within IAI46_04030 at 872.718 kb on - strand, within IAI46_04030 at 872.740 kb on + strand, within IAI46_04030 at 872.846 kb on - strand, within IAI46_04030
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 870,953 + -0.2 870,972 + -0.8 871,347 + -1.2 871,367 + -0.5 871,387 + -2.4 871,452 + -1.6 871,456 + -2.4 871,635 - IAI46_04025 0.26 -0.5 871,638 - IAI46_04025 0.27 +0.7 871,649 + IAI46_04025 0.30 -2.8 871,651 + IAI46_04025 0.30 +0.6 871,808 + IAI46_04025 0.71 +0.5 871,808 + IAI46_04025 0.71 +0.6 871,809 - IAI46_04025 0.71 -1.4 871,809 - IAI46_04025 0.71 +0.7 871,922 + -0.3 871,961 - +0.9 871,966 + -0.3 871,967 - -1.3 871,978 + +1.2 871,979 - +0.0 871,982 + -0.2 871,982 + -1.3 871,983 - +0.5 871,988 + +1.7 872,029 - +1.6 872,049 + +0.5 872,049 + +0.2 872,093 - -1.6 872,158 - -0.4 872,162 - -1.0 872,162 - -0.2 872,163 + -1.4 872,225 - -0.4 872,225 - -1.3 872,225 - -2.3 872,225 - -0.6 872,227 - +2.2 872,391 + IAI46_04030 0.25 -0.2 872,391 + IAI46_04030 0.25 -2.4 872,391 + IAI46_04030 0.25 -1.1 872,392 - IAI46_04030 0.26 -1.0 872,431 + IAI46_04030 0.31 -0.8 872,542 + IAI46_04030 0.46 -0.3 872,542 + IAI46_04030 0.46 +0.2 872,569 + IAI46_04030 0.50 -1.2 872,569 + IAI46_04030 0.50 -0.3 872,570 - IAI46_04030 0.50 +0.9 872,655 + IAI46_04030 0.62 -1.7 872,655 + IAI46_04030 0.62 +1.0 872,656 - IAI46_04030 0.62 -0.8 872,656 - IAI46_04030 0.62 +0.7 872,656 - IAI46_04030 0.62 +2.5 872,656 - IAI46_04030 0.62 +0.1 872,656 - IAI46_04030 0.62 +0.0 872,656 - IAI46_04030 0.62 +0.2 872,659 + IAI46_04030 0.63 +0.5 872,683 - IAI46_04030 0.66 +1.5 872,683 - IAI46_04030 0.66 +0.1 872,685 + IAI46_04030 0.66 +0.5 872,685 + IAI46_04030 0.66 -0.1 872,686 - IAI46_04030 0.66 +0.2 872,717 + IAI46_04030 0.71 -2.1 872,718 - IAI46_04030 0.71 -1.1 872,740 + IAI46_04030 0.74 +1.0 872,846 - IAI46_04030 0.88 +0.3
Or see this region's nucleotide sequence