Strain Fitness in Serratia liquefaciens MT49 around IAI46_03795

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03790 and IAI46_03795 are separated by 206 nucleotidesIAI46_03795 and IAI46_03800 are separated by 433 nucleotides IAI46_03790: IAI46_03790 - RNA polymerase sigma factor RpoS, at 823,786 to 824,784 _03790 IAI46_03795: IAI46_03795 - glutaminase A, at 824,991 to 825,995 _03795 IAI46_03800: IAI46_03800 - DNA mismatch repair protein MutS, at 826,429 to 828,984 _03800 Position (kb) 824 825 826Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.225 kb on - strand, within IAI46_03790at 824.225 kb on - strand, within IAI46_03790at 824.229 kb on + strand, within IAI46_03790at 824.281 kb on - strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.307 kb on + strand, within IAI46_03790at 824.307 kb on + strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.445 kb on + strand, within IAI46_03790at 824.445 kb on + strand, within IAI46_03790at 824.446 kb on - strand, within IAI46_03790at 824.446 kb on - strand, within IAI46_03790at 824.638 kb on + strand, within IAI46_03790at 824.739 kb on - strandat 824.782 kb on + strandat 824.783 kb on - strandat 824.826 kb on - strandat 824.846 kb on + strandat 824.941 kb on + strandat 824.943 kb on + strandat 824.943 kb on + strandat 824.943 kb on + strandat 824.944 kb on - strandat 824.954 kb on + strandat 824.954 kb on + strandat 824.954 kb on + strandat 824.955 kb on - strandat 824.955 kb on - strandat 825.011 kb on + strandat 825.011 kb on + strandat 825.011 kb on + strandat 825.012 kb on - strandat 825.012 kb on - strandat 825.062 kb on + strandat 825.063 kb on - strandat 825.075 kb on - strandat 825.075 kb on - strandat 825.091 kb on + strandat 825.091 kb on + strandat 825.092 kb on - strand, within IAI46_03795at 825.092 kb on - strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.175 kb on - strand, within IAI46_03795at 825.196 kb on + strand, within IAI46_03795at 825.196 kb on + strand, within IAI46_03795at 825.197 kb on - strand, within IAI46_03795at 825.197 kb on - strand, within IAI46_03795at 825.238 kb on + strand, within IAI46_03795at 825.238 kb on + strand, within IAI46_03795at 825.238 kb on + strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.352 kb on + strand, within IAI46_03795at 825.353 kb on - strand, within IAI46_03795at 825.356 kb on + strand, within IAI46_03795at 825.382 kb on + strand, within IAI46_03795at 825.394 kb on + strand, within IAI46_03795at 825.395 kb on - strand, within IAI46_03795at 825.454 kb on + strand, within IAI46_03795at 825.467 kb on + strand, within IAI46_03795at 825.480 kb on - strand, within IAI46_03795at 825.491 kb on - strand, within IAI46_03795at 825.500 kb on + strand, within IAI46_03795at 825.500 kb on + strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.564 kb on - strand, within IAI46_03795at 825.673 kb on - strand, within IAI46_03795at 825.704 kb on + strand, within IAI46_03795at 825.784 kb on - strand, within IAI46_03795at 825.806 kb on - strand, within IAI46_03795at 825.812 kb on + strand, within IAI46_03795at 825.820 kb on + strand, within IAI46_03795at 825.821 kb on - strand, within IAI46_03795at 825.908 kb on - strandat 825.928 kb on - strandat 826.056 kb on + strandat 826.216 kb on - strandat 826.230 kb on + strandat 826.289 kb on - strandat 826.343 kb on + strandat 826.418 kb on + strandat 826.418 kb on + strandat 826.418 kb on + strandat 826.419 kb on - strandat 826.437 kb on + strandat 826.451 kb on + strandat 826.673 kb on + strandat 826.710 kb on + strand, within IAI46_03800at 826.799 kb on + strand, within IAI46_03800at 826.799 kb on + strand, within IAI46_03800at 826.799 kb on + strand, within IAI46_03800at 826.871 kb on - strand, within IAI46_03800at 826.880 kb on + strand, within IAI46_03800at 826.880 kb on + strand, within IAI46_03800at 826.881 kb on - strand, within IAI46_03800at 826.881 kb on - strand, within IAI46_03800at 826.975 kb on - strand, within IAI46_03800

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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824,224 + IAI46_03790 0.44 +0.4
824,224 + IAI46_03790 0.44 +0.8
824,224 + IAI46_03790 0.44 -2.7
824,224 + IAI46_03790 0.44 +0.6
824,224 + IAI46_03790 0.44 +0.1
824,224 + IAI46_03790 0.44 +0.5
824,224 + IAI46_03790 0.44 +0.1
824,225 - IAI46_03790 0.44 +0.1
824,225 - IAI46_03790 0.44 -1.8
824,229 + IAI46_03790 0.44 -1.8
824,281 - IAI46_03790 0.50 -0.6
824,303 + IAI46_03790 0.52 +2.5
824,303 + IAI46_03790 0.52 +1.0
824,303 + IAI46_03790 0.52 +0.4
824,303 + IAI46_03790 0.52 +1.0
824,307 + IAI46_03790 0.52 +0.5
824,307 + IAI46_03790 0.52 -1.7
824,308 - IAI46_03790 0.52 -0.4
824,308 - IAI46_03790 0.52 +1.7
824,308 - IAI46_03790 0.52 +1.1
824,308 - IAI46_03790 0.52 +1.0
824,308 - IAI46_03790 0.52 +0.2
824,308 - IAI46_03790 0.52 +0.6
824,308 - IAI46_03790 0.52 -1.2
824,445 + IAI46_03790 0.66 +2.2
824,445 + IAI46_03790 0.66 +0.1
824,446 - IAI46_03790 0.66 +0.5
824,446 - IAI46_03790 0.66 -1.9
824,638 + IAI46_03790 0.85 +1.0
824,739 - -1.6
824,782 + -2.1
824,783 - +0.1
824,826 - -0.9
824,846 + +1.4
824,941 + +1.4
824,943 + -1.7
824,943 + +0.9
824,943 + -1.1
824,944 - -1.4
824,954 + -0.0
824,954 + -0.4
824,954 + +0.5
824,955 - -0.2
824,955 - +0.0
825,011 + -1.6
825,011 + +1.1
825,011 + -0.1
825,012 - -1.4
825,012 - +0.4
825,062 + +0.4
825,063 - +2.4
825,075 - -2.0
825,075 - -0.3
825,091 + -1.2
825,091 + -1.6
825,092 - IAI46_03795 0.10 +0.5
825,092 - IAI46_03795 0.10 +1.1
825,172 + IAI46_03795 0.18 +0.7
825,172 + IAI46_03795 0.18 +0.8
825,172 + IAI46_03795 0.18 -0.6
825,172 + IAI46_03795 0.18 -0.6
825,172 + IAI46_03795 0.18 -1.9
825,172 + IAI46_03795 0.18 +0.7
825,173 - IAI46_03795 0.18 -0.2
825,173 - IAI46_03795 0.18 -0.3
825,173 - IAI46_03795 0.18 -1.4
825,173 - IAI46_03795 0.18 -3.8
825,173 - IAI46_03795 0.18 -1.8
825,173 - IAI46_03795 0.18 +1.6
825,175 - IAI46_03795 0.18 +0.4
825,196 + IAI46_03795 0.20 -1.2
825,196 + IAI46_03795 0.20 -1.9
825,197 - IAI46_03795 0.20 +0.3
825,197 - IAI46_03795 0.20 -0.0
825,238 + IAI46_03795 0.25 +1.3
825,238 + IAI46_03795 0.25 +0.8
825,238 + IAI46_03795 0.25 -1.6
825,239 - IAI46_03795 0.25 -0.4
825,239 - IAI46_03795 0.25 +0.0
825,239 - IAI46_03795 0.25 +1.3
825,239 - IAI46_03795 0.25 -2.6
825,239 - IAI46_03795 0.25 -0.1
825,352 + IAI46_03795 0.36 +0.1
825,353 - IAI46_03795 0.36 -1.8
825,356 + IAI46_03795 0.36 -0.3
825,382 + IAI46_03795 0.39 -0.1
825,394 + IAI46_03795 0.40 -1.9
825,395 - IAI46_03795 0.40 -0.5
825,454 + IAI46_03795 0.46 +1.3
825,467 + IAI46_03795 0.47 +1.5
825,480 - IAI46_03795 0.49 -1.4
825,491 - IAI46_03795 0.50 +1.1
825,500 + IAI46_03795 0.51 +1.9
825,500 + IAI46_03795 0.51 -0.3
825,501 - IAI46_03795 0.51 +1.5
825,501 - IAI46_03795 0.51 +0.1
825,501 - IAI46_03795 0.51 +1.3
825,501 - IAI46_03795 0.51 -0.3
825,564 - IAI46_03795 0.57 +0.5
825,673 - IAI46_03795 0.68 -1.1
825,704 + IAI46_03795 0.71 -1.4
825,784 - IAI46_03795 0.79 +0.1
825,806 - IAI46_03795 0.81 +1.9
825,812 + IAI46_03795 0.82 -3.2
825,820 + IAI46_03795 0.82 -0.1
825,821 - IAI46_03795 0.83 -0.6
825,908 - -0.5
825,928 - +0.4
826,056 + +0.3
826,216 - +0.3
826,230 + +2.2
826,289 - -0.8
826,343 + +0.7
826,418 + +0.9
826,418 + -0.1
826,418 + -1.4
826,419 - -0.5
826,437 + -1.8
826,451 + +0.9
826,673 + -1.0
826,710 + IAI46_03800 0.11 +0.4
826,799 + IAI46_03800 0.14 +0.4
826,799 + IAI46_03800 0.14 -1.4
826,799 + IAI46_03800 0.14 -0.9
826,871 - IAI46_03800 0.17 -1.5
826,880 + IAI46_03800 0.18 -2.8
826,880 + IAI46_03800 0.18 +1.9
826,881 - IAI46_03800 0.18 +1.5
826,881 - IAI46_03800 0.18 -0.0
826,975 - IAI46_03800 0.21 +0.9

Or see this region's nucleotide sequence