Strain Fitness in Serratia liquefaciens MT49 around IAI46_03790

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03785 and IAI46_03790 are separated by 54 nucleotidesIAI46_03790 and IAI46_03795 are separated by 206 nucleotides IAI46_03785: IAI46_03785 - murein hydrolase activator NlpD, at 822,739 to 823,731 _03785 IAI46_03790: IAI46_03790 - RNA polymerase sigma factor RpoS, at 823,786 to 824,784 _03790 IAI46_03795: IAI46_03795 - glutaminase A, at 824,991 to 825,995 _03795 Position (kb) 823 824 825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 822.798 kb on + strandat 822.798 kb on + strandat 822.799 kb on - strandat 822.825 kb on + strandat 822.825 kb on + strandat 822.910 kb on + strand, within IAI46_03785at 822.922 kb on + strand, within IAI46_03785at 822.923 kb on - strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.924 kb on + strand, within IAI46_03785at 822.925 kb on - strand, within IAI46_03785at 822.946 kb on + strand, within IAI46_03785at 822.947 kb on - strand, within IAI46_03785at 822.947 kb on - strand, within IAI46_03785at 822.955 kb on - strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.957 kb on + strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.958 kb on - strand, within IAI46_03785at 822.961 kb on + strand, within IAI46_03785at 822.961 kb on + strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.962 kb on - strand, within IAI46_03785at 822.963 kb on + strand, within IAI46_03785at 823.039 kb on - strand, within IAI46_03785at 823.044 kb on + strand, within IAI46_03785at 823.045 kb on - strand, within IAI46_03785at 823.057 kb on + strand, within IAI46_03785at 823.058 kb on - strand, within IAI46_03785at 823.092 kb on + strand, within IAI46_03785at 823.159 kb on - strand, within IAI46_03785at 823.159 kb on - strand, within IAI46_03785at 823.219 kb on + strand, within IAI46_03785at 823.252 kb on - strand, within IAI46_03785at 823.260 kb on - strand, within IAI46_03785at 823.287 kb on + strand, within IAI46_03785at 823.287 kb on + strand, within IAI46_03785at 823.361 kb on + strand, within IAI46_03785at 823.361 kb on + strand, within IAI46_03785at 823.365 kb on + strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.396 kb on - strand, within IAI46_03785at 823.402 kb on - strand, within IAI46_03785at 823.429 kb on - strand, within IAI46_03785at 823.429 kb on - strand, within IAI46_03785at 823.465 kb on - strand, within IAI46_03785at 823.490 kb on + strand, within IAI46_03785at 823.490 kb on + strand, within IAI46_03785at 823.490 kb on + strand, within IAI46_03785at 823.491 kb on - strand, within IAI46_03785at 823.491 kb on - strand, within IAI46_03785at 823.495 kb on + strand, within IAI46_03785at 823.496 kb on - strand, within IAI46_03785at 823.496 kb on - strand, within IAI46_03785at 823.529 kb on + strand, within IAI46_03785at 823.529 kb on + strand, within IAI46_03785at 823.556 kb on - strand, within IAI46_03785at 823.556 kb on - strand, within IAI46_03785at 823.568 kb on - strand, within IAI46_03785at 823.641 kb on + strandat 823.641 kb on + strandat 823.641 kb on + strandat 823.729 kb on + strandat 823.743 kb on + strandat 823.744 kb on - strandat 823.751 kb on + strandat 823.766 kb on - strandat 823.775 kb on - strandat 823.775 kb on - strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.785 kb on + strandat 823.797 kb on + strandat 823.798 kb on - strandat 823.883 kb on + strandat 823.883 kb on + strandat 823.884 kb on - strandat 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.224 kb on + strand, within IAI46_03790at 824.225 kb on - strand, within IAI46_03790at 824.225 kb on - strand, within IAI46_03790at 824.229 kb on + strand, within IAI46_03790at 824.281 kb on - strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.303 kb on + strand, within IAI46_03790at 824.307 kb on + strand, within IAI46_03790at 824.307 kb on + strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.308 kb on - strand, within IAI46_03790at 824.445 kb on + strand, within IAI46_03790at 824.445 kb on + strand, within IAI46_03790at 824.446 kb on - strand, within IAI46_03790at 824.446 kb on - strand, within IAI46_03790at 824.638 kb on + strand, within IAI46_03790at 824.739 kb on - strandat 824.782 kb on + strandat 824.783 kb on - strandat 824.826 kb on - strandat 824.846 kb on + strandat 824.941 kb on + strandat 824.943 kb on + strandat 824.943 kb on + strandat 824.943 kb on + strandat 824.944 kb on - strandat 824.954 kb on + strandat 824.954 kb on + strandat 824.954 kb on + strandat 824.955 kb on - strandat 824.955 kb on - strandat 825.011 kb on + strandat 825.011 kb on + strandat 825.011 kb on + strandat 825.012 kb on - strandat 825.012 kb on - strandat 825.062 kb on + strandat 825.063 kb on - strandat 825.075 kb on - strandat 825.075 kb on - strandat 825.091 kb on + strandat 825.091 kb on + strandat 825.092 kb on - strand, within IAI46_03795at 825.092 kb on - strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.172 kb on + strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.173 kb on - strand, within IAI46_03795at 825.175 kb on - strand, within IAI46_03795at 825.196 kb on + strand, within IAI46_03795at 825.196 kb on + strand, within IAI46_03795at 825.197 kb on - strand, within IAI46_03795at 825.197 kb on - strand, within IAI46_03795at 825.238 kb on + strand, within IAI46_03795at 825.238 kb on + strand, within IAI46_03795at 825.238 kb on + strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.239 kb on - strand, within IAI46_03795at 825.352 kb on + strand, within IAI46_03795at 825.353 kb on - strand, within IAI46_03795at 825.356 kb on + strand, within IAI46_03795at 825.382 kb on + strand, within IAI46_03795at 825.394 kb on + strand, within IAI46_03795at 825.395 kb on - strand, within IAI46_03795at 825.454 kb on + strand, within IAI46_03795at 825.467 kb on + strand, within IAI46_03795at 825.480 kb on - strand, within IAI46_03795at 825.491 kb on - strand, within IAI46_03795at 825.500 kb on + strand, within IAI46_03795at 825.500 kb on + strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.501 kb on - strand, within IAI46_03795at 825.564 kb on - strand, within IAI46_03795at 825.673 kb on - strand, within IAI46_03795at 825.704 kb on + strand, within IAI46_03795at 825.784 kb on - strand, within IAI46_03795

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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822,798 + -0.1
822,798 + +1.4
822,799 - +0.9
822,825 + -0.6
822,825 + +0.3
822,910 + IAI46_03785 0.17 +0.7
822,922 + IAI46_03785 0.18 +0.2
822,923 - IAI46_03785 0.19 -0.1
822,924 + IAI46_03785 0.19 -0.3
822,924 + IAI46_03785 0.19 -0.1
822,924 + IAI46_03785 0.19 -0.3
822,925 - IAI46_03785 0.19 -0.7
822,946 + IAI46_03785 0.21 -0.9
822,947 - IAI46_03785 0.21 -2.2
822,947 - IAI46_03785 0.21 +0.0
822,955 - IAI46_03785 0.22 +2.1
822,957 + IAI46_03785 0.22 -0.8
822,957 + IAI46_03785 0.22 -1.5
822,957 + IAI46_03785 0.22 +0.1
822,957 + IAI46_03785 0.22 +0.8
822,957 + IAI46_03785 0.22 +1.0
822,957 + IAI46_03785 0.22 +0.3
822,958 - IAI46_03785 0.22 +0.9
822,958 - IAI46_03785 0.22 -0.5
822,958 - IAI46_03785 0.22 +1.5
822,958 - IAI46_03785 0.22 +0.1
822,961 + IAI46_03785 0.22 +0.8
822,961 + IAI46_03785 0.22 +0.7
822,962 - IAI46_03785 0.22 +1.0
822,962 - IAI46_03785 0.22 +0.1
822,962 - IAI46_03785 0.22 -1.3
822,962 - IAI46_03785 0.22 -0.3
822,963 + IAI46_03785 0.23 +2.3
823,039 - IAI46_03785 0.30 -1.5
823,044 + IAI46_03785 0.31 +1.4
823,045 - IAI46_03785 0.31 +0.2
823,057 + IAI46_03785 0.32 +3.2
823,058 - IAI46_03785 0.32 -1.6
823,092 + IAI46_03785 0.36 +1.1
823,159 - IAI46_03785 0.42 -0.1
823,159 - IAI46_03785 0.42 +0.8
823,219 + IAI46_03785 0.48 +0.8
823,252 - IAI46_03785 0.52 +1.8
823,260 - IAI46_03785 0.52 -0.9
823,287 + IAI46_03785 0.55 +1.5
823,287 + IAI46_03785 0.55 -1.8
823,361 + IAI46_03785 0.63 +1.7
823,361 + IAI46_03785 0.63 +1.4
823,365 + IAI46_03785 0.63 -0.1
823,396 - IAI46_03785 0.66 -1.4
823,396 - IAI46_03785 0.66 +2.7
823,396 - IAI46_03785 0.66 -1.8
823,402 - IAI46_03785 0.67 +0.4
823,429 - IAI46_03785 0.69 +1.7
823,429 - IAI46_03785 0.69 -2.1
823,465 - IAI46_03785 0.73 +0.6
823,490 + IAI46_03785 0.76 -1.6
823,490 + IAI46_03785 0.76 +1.3
823,490 + IAI46_03785 0.76 +0.6
823,491 - IAI46_03785 0.76 +1.5
823,491 - IAI46_03785 0.76 +0.9
823,495 + IAI46_03785 0.76 +0.3
823,496 - IAI46_03785 0.76 -0.3
823,496 - IAI46_03785 0.76 +1.4
823,529 + IAI46_03785 0.80 +0.0
823,529 + IAI46_03785 0.80 +1.5
823,556 - IAI46_03785 0.82 +0.1
823,556 - IAI46_03785 0.82 -0.2
823,568 - IAI46_03785 0.83 -0.1
823,641 + +0.1
823,641 + -2.1
823,641 + +0.7
823,729 + -2.1
823,743 + -1.5
823,744 - +2.8
823,751 + +0.4
823,766 - +0.1
823,775 - -1.3
823,775 - +0.5
823,785 + +1.6
823,785 + -0.0
823,785 + +0.4
823,785 + -0.4
823,785 + +1.0
823,785 + +1.2
823,785 + -1.2
823,785 + +1.4
823,785 + +0.8
823,797 + -1.6
823,798 - +1.3
823,883 + -2.4
823,883 + +0.8
823,884 - +1.6
824,224 + IAI46_03790 0.44 +0.4
824,224 + IAI46_03790 0.44 +0.8
824,224 + IAI46_03790 0.44 -2.7
824,224 + IAI46_03790 0.44 +0.6
824,224 + IAI46_03790 0.44 +0.1
824,224 + IAI46_03790 0.44 +0.5
824,224 + IAI46_03790 0.44 +0.1
824,225 - IAI46_03790 0.44 +0.1
824,225 - IAI46_03790 0.44 -1.8
824,229 + IAI46_03790 0.44 -1.8
824,281 - IAI46_03790 0.50 -0.6
824,303 + IAI46_03790 0.52 +2.5
824,303 + IAI46_03790 0.52 +1.0
824,303 + IAI46_03790 0.52 +0.4
824,303 + IAI46_03790 0.52 +1.0
824,307 + IAI46_03790 0.52 +0.5
824,307 + IAI46_03790 0.52 -1.7
824,308 - IAI46_03790 0.52 -0.4
824,308 - IAI46_03790 0.52 +1.7
824,308 - IAI46_03790 0.52 +1.1
824,308 - IAI46_03790 0.52 +1.0
824,308 - IAI46_03790 0.52 +0.2
824,308 - IAI46_03790 0.52 +0.6
824,308 - IAI46_03790 0.52 -1.2
824,445 + IAI46_03790 0.66 +2.2
824,445 + IAI46_03790 0.66 +0.1
824,446 - IAI46_03790 0.66 +0.5
824,446 - IAI46_03790 0.66 -1.9
824,638 + IAI46_03790 0.85 +1.0
824,739 - -1.6
824,782 + -2.1
824,783 - +0.1
824,826 - -0.9
824,846 + +1.4
824,941 + +1.4
824,943 + -1.7
824,943 + +0.9
824,943 + -1.1
824,944 - -1.4
824,954 + -0.0
824,954 + -0.4
824,954 + +0.5
824,955 - -0.2
824,955 - +0.0
825,011 + -1.6
825,011 + +1.1
825,011 + -0.1
825,012 - -1.4
825,012 - +0.4
825,062 + +0.4
825,063 - +2.4
825,075 - -2.0
825,075 - -0.3
825,091 + -1.2
825,091 + -1.6
825,092 - IAI46_03795 0.10 +0.5
825,092 - IAI46_03795 0.10 +1.1
825,172 + IAI46_03795 0.18 +0.7
825,172 + IAI46_03795 0.18 +0.8
825,172 + IAI46_03795 0.18 -0.6
825,172 + IAI46_03795 0.18 -0.6
825,172 + IAI46_03795 0.18 -1.9
825,172 + IAI46_03795 0.18 +0.7
825,173 - IAI46_03795 0.18 -0.2
825,173 - IAI46_03795 0.18 -0.3
825,173 - IAI46_03795 0.18 -1.4
825,173 - IAI46_03795 0.18 -3.8
825,173 - IAI46_03795 0.18 -1.8
825,173 - IAI46_03795 0.18 +1.6
825,175 - IAI46_03795 0.18 +0.4
825,196 + IAI46_03795 0.20 -1.2
825,196 + IAI46_03795 0.20 -1.9
825,197 - IAI46_03795 0.20 +0.3
825,197 - IAI46_03795 0.20 -0.0
825,238 + IAI46_03795 0.25 +1.3
825,238 + IAI46_03795 0.25 +0.8
825,238 + IAI46_03795 0.25 -1.6
825,239 - IAI46_03795 0.25 -0.4
825,239 - IAI46_03795 0.25 +0.0
825,239 - IAI46_03795 0.25 +1.3
825,239 - IAI46_03795 0.25 -2.6
825,239 - IAI46_03795 0.25 -0.1
825,352 + IAI46_03795 0.36 +0.1
825,353 - IAI46_03795 0.36 -1.8
825,356 + IAI46_03795 0.36 -0.3
825,382 + IAI46_03795 0.39 -0.1
825,394 + IAI46_03795 0.40 -1.9
825,395 - IAI46_03795 0.40 -0.5
825,454 + IAI46_03795 0.46 +1.3
825,467 + IAI46_03795 0.47 +1.5
825,480 - IAI46_03795 0.49 -1.4
825,491 - IAI46_03795 0.50 +1.1
825,500 + IAI46_03795 0.51 +1.9
825,500 + IAI46_03795 0.51 -0.3
825,501 - IAI46_03795 0.51 +1.5
825,501 - IAI46_03795 0.51 +0.1
825,501 - IAI46_03795 0.51 +1.3
825,501 - IAI46_03795 0.51 -0.3
825,564 - IAI46_03795 0.57 +0.5
825,673 - IAI46_03795 0.68 -1.1
825,704 + IAI46_03795 0.71 -1.4
825,784 - IAI46_03795 0.79 +0.1

Or see this region's nucleotide sequence